Shewanella sp. ANA-3: Shewana3_2988
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Entry
Shewana3_2988 CDS
T00428
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewana3_2988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shn03019
]
Shewana3_2988
Enzymes [BR:
shn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shewana3_2988
Messenger RNA biogenesis [BR:
shn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shewana3_2988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UvrD-helicase
AAA_19
UTP25_NTPase-like
AroM
AAA_22
SecA_DEAD
Gag_p24
DUF87
Motif
Other DBs
NCBI-ProteinID:
ABK49213
UniProt:
A0KZJ4
LinkDB
All DBs
Position
1:3593167..3594468
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AA seq
433 aa
AA seq
DB search
MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK
LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA
TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE
KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRLDNVSEQIIAEKSMQGRRVKM
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttgccccgagattttacgcgctatctcagattgcggt
tatcaaaaaatgacacctattcagcagcaagcgatccccgctatccgccgcgggcaagat
gtgctggctagcgcgcaaacaggtacgggcaaaacggcggccttcgccctgccgatactg
caaaagatggtagaaaaccctagcgagaccctaaaatcgaacgcgcgggtattaatcctc
acgccgactcgtgagctcgcagctcaagtcgccgacaacgttgaagcctacagcaagtat
ttaaatttcagtgtattaaccatttacggtggtgtaaaggttgagactcaggcgcaaaag
cttaagcgcggtgccgatattattgtcgcgacgccggggcgcttactcgaacacctgacc
gcctgtaatttaagcctctctagcatcgattttttagtgctcgatgaagccgaccgtatg
ttagacatgggctttaatgcggatattcaaaaaatccttcaagcggtgaataagaagcgt
caaaacctattattctcagctaccttctcaagtgcggtgaaaaaactggccaacgacatg
atggtcaaacctcaggtgatcagcgccgataagcaaaacaccaccgccgataccgtgagc
caagtggtgtatccggtggagcagcgccgtaagcgcgaactcttatccgaactgattggt
aagaagaactggcaacaagtgttggtctttaccgcgacgcgcgatgcggccgacacctta
gtgaaagaattgaatttagatggaattccctctgaagtcgtccacggtgaaaaggcacaa
ggtagccgtcgccgcgcgctgcgtgagtttgtctcaggcaaagtgcgcgtattagtcgcc
actgaagtcgccgcccgcggcttagacattccaagccttgagtatgtagtcaacttcgac
ttacctttccttgccgaagactatgtgcaccgtattggtcgtaccggtcgcgcgggtaag
tcaggggttgcgatttcatttgtgagccgtgaagaagagcgcacactcgctgatattgaa
aagctaatcggccaaaaaattcgtcgtattaccgtgccaggatacgaagtcggtagccgc
gacttgctgttaaagcagctacaaacccgtcgtagttttgccaagaaacaacagcgactc
gacaacgttagcgagcagatcatcgccgagaaaagcatgcagggccgccgcgtgaagatg
aaggttggccaagccccaagtaaggcgaaaaaacttaagtaa
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