Shewanella sp. ANA-3: Shewana3_3406
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Entry
Shewana3_3406 CDS
T00428
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewana3_3406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shn03019
]
Shewana3_3406
Enzymes [BR:
shn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Shewana3_3406
Messenger RNA biogenesis [BR:
shn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Shewana3_3406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ABK49629
UniProt:
A0L0R0
LinkDB
All DBs
Position
1:4074921..4076228
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AA seq
435 aa
AA seq
DB search
MPRDAHSISRKQISENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEE
IKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGDSNEKISKANAEGRLLRDNVYGE
IDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRAV
RFATKLSMAIEEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLFA
PLFPQVDAQLKDAPKGPAMKMVQAIMKSTDARVNEDKPVTPSFFYAAILWYPLRQRAEDI
AVESGLTLYDAFFAAMGDVIEQQCQTISIPRRFSTPAKDIWQLQLRFDRSQGTRAFKLLE
HPKFRAAYDLLLLRGEVEGGNVAKSAAWWQQFVEADETERLNIARSGNKAAGNRNRNSPQ
RRRRRPSAAKAKAAE
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
gtgcctcgggatgcgcattcgatctcccgtaagcagatcagcgaaaacgcacttaaagta
ttataccgattgaataaatcaggtttccaggcctatttagttggtgggggcgtacgggat
ttactcctcggactcgaaccgaaagacttcgacgtggtcaccaatgcgacgccggaagag
attaaaaagctgtttcgcaattgccgcgtagtcggacgccgcttccgcctcgcccatatt
gtgtttggccgcgatgtgattgaagttgccaccttccgtggtcaccacggcgacagtaat
gaaaagatttccaaagccaatgccgaagggcgtttgctcagggataacgtgtacggtgaa
atcgatgaagacgcagagcgccgcgattttaccgtcaacgccctttactacgatattagc
gactactctatccgtagctatggcggcggtatggaagatcttaaggcgggcaccttaagg
ctgattggcgatcccgaaacccgttaccgtgaagatccagtgcgtatgctcagggctgtg
cgttttgccactaagctcagcatggctattgaagaagtgaccgctaaacctatcaaacag
ttagcgccactgctcaaggacattccagccgcccgcatgtatgaagaagtgctcaaactt
ttcttcgccggcaaagccatggccaactttgagatgatgcaggaatataagctgttcgcg
ccgctcttcccgcaagtcgacgcccaattaaaagatgcgccaaaaggccctgcgatgaag
atggtgcaagccattatgaagagcacggatgcgcgcgtgaacgaagataagcctgttact
ccgtcattcttctatgcggcgatcctctggtatccactacgtcaacgcgccgaagatatc
gcggtcgagagcggtctgactttatacgatgcgttttttgccgccatgggtgatgtgatt
gagcagcaatgccaaaccatcagcattccgcgccgttttagtacgcccgccaaagacatc
tggcaattgcaattacgcttcgatcgcagccaaggcacacgcgcctttaaactgttagag
caccctaaatttagagcggcctacgacttactgttactgcgcggcgaagtcgaaggtggc
aatgtcgccaagagtgccgcctggtggcaacagtttgttgaagcggatgaaaccgagcgt
ttgaacatcgcccgcagtggtaacaaagcggcgggtaaccgtaaccgcaattcaccacag
cgccgtcgccgtcgcccgagtgccgctaaagccaaagccgccgaataa
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