Shewanella sp. ANA-3: Shewana3_4109
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Entry
Shewana3_4109 CDS
T00428
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03030
DNA replication
shn03410
Base excision repair
shn03420
Nucleotide excision repair
shn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shewana3_4109
03410 Base excision repair
Shewana3_4109
03420 Nucleotide excision repair
Shewana3_4109
03440 Homologous recombination
Shewana3_4109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shn03032
]
Shewana3_4109
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_4109
Enzymes [BR:
shn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shewana3_4109
DNA replication proteins [BR:
shn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shewana3_4109
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Shewana3_4109
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shewana3_4109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABK50326
UniProt:
A0L2Q7
LinkDB
All DBs
Position
4931315..4934083
Genome browser
AA seq
922 aa
AA seq
DB search
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT
IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA
DMLKLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEVLDNKAPATV
AAKAETTETQEESAPSVTIETQYDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAE
LVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTALEKLRPLLEDAKIKKVGQNLKYDISV
LANAGIKLQGVVFDTMLESYVFNSIASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFN
QIPLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFI
DSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAF
AEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAP
MQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAK
AANLDVELLAEAGIGDNWDQAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccatagccaataacccacttgtccttgtggatggatcttcttatttatatcgc
gcctattatgcgcctcctcacctgacaaactcaaagggcgaagctactggtgctgtttat
ggcgtagtgaatatgctccgcagcttattaagccgttatcaacctagccatatcgctgtg
gtgttcgatgctaaaggcaaaaccttccgcaatgacttatatgaagaatacaaggcacat
cgcccgcctatgccggatgacctgcgctcacaaattgagccactacaccgtattatccgt
gccttaggcctgcccttaatctctattcctggtgttgaggcggacgatgttatcggcaca
atcgctcgccaagcgagccgcgaaaaccgcgctgtactcatcagcactggtgataaagac
atggcgcagctggttgatgaaaatatcacgctgatcaacaccatgacagataccattatg
ggccctgaagaagttgcggctaaatatggtgtaggtccagacagaattatcgatttctta
gcgctgatgggcgataaggcggataacattcccggtttacctggtgttggcgaaaaaacc
gcattagctatgctcacgggggcgggtagtgtcgccaatttgcttgcagagcccgaaaaa
gtaaccgaattaggctttaggggcgcaaaaaccatggcggcgaaaatcatcgacaatgcc
gacatgctaaagctgtcctatgagcttgccaccattaaaaccgatgttgaactcgaacaa
gattggcatgagctcaccgccaaacccgctgacagggacgaactgatcaaatgctacggc
gagatggagtttaaacgctggcttgccgaagtcttagataataaggcgccagcgacggtc
gcagcaaaagccgaaacaacagagacccaagaagagtcagcgcccagcgtcacgattgaa
acccaatacgatacaattctgaccgaagctcagcttgatgagtggattgccaaactcaaa
caagcgccattaatggccgtagataccgagaccaccagcctcgactatatggttgcggaa
ttggttggcctgtcctttgctgttgaagcgggtaaagccgcctatctgcccttagcccac
gattatgttggcgcacctcaacaattagataagcagactgcactcgaaaaactgcgcccc
ttactcgaagatgccaagattaaaaaagtcggtcaaaatctgaaatatgacatcagcgta
ttagccaatgcaggcataaaactccaaggcgtggtattcgacactatgctcgaatcctat
gtgtttaactcgatcgcctcacgccatgatatggatgggttggcgctaaaatatctgggc
cataaaaatatcgcctttgaagatatcgcaggtaaaggtgctaaacagctgaccttcaac
caaattccgttggaaacagctgcgccctatgcggcggaagatgccgatattaccctacgt
ctacatcaacatttgtggccaagactcgaaaaagagaccgaattagcctcggtctttacc
gatattgaactgccgctgatccaaatactgtccgatattgaacgccaaggtgtgtttatc
gatagtatgttgctcggccaacagagtgatgaacttgcccgcaaaatcgatgagttagaa
acaaaagcttatgatattgcaggtgaaaaattcaatttaagctcaccaaagcaactacaa
gtgctgttttttgaaaagctgggttatccggtcatcaaaaaaacccctaagggcgccccc
tctaccgcggaagaagtactggttgagttggcattggatttccctctgcctaaagtgatc
cttgaacatagaagcctaaccaagctaaagagtacttacaccgacaagctccctctaatg
gtgaacgcgaaaacgggtcgggtacacacaagctaccatcaggccaacgccgcaacgggg
cgtttgtcctcgagcgaaccaaacctacagaatattcctatccgcaccgaggaaggtcgt
cgtattcgccaagcctttattgcgccgcagggacgtaagattttggccgccgactattcg
cagattgaattacgcatcatggcgcatttatcccaagatgcgggcttacttaaagccttc
gccgaaggtaaagacattcacagagccaccgccgccgaagtatttggcaccgactttgac
agtgtcacctcggagcagcgtcgccgcgccaaagccgttaactttggccttatctatggc
atgtccgcctttggattggcgcgtcagctcgatattccccgcaacgaggcacaaacttac
atcgacacttacttcgcccgctatccaggcgtattaaggtatatggaagaaacacgagcc
agtgcagcagaacttggctatgtctctacgctatttgggcgccgtctctatttacctgaa
attcgcgatcgtaatgcaatgcgccgccaagcagcagaaagagccgcgattaacgcccca
atgcaaggcaccgccgcggatattattaaaaaagccatgatcagcattgccgattggata
aaaaccgatacccaaggtgaaatcgccatgatcatgcaagtccacgacgaattagtattc
gaagtcgatgccgataaagccgaaacactcaagctcaaggtgtgtgaactcatggcaaaa
gcagccaatctggacgtggaacttctggcagaagctggtattggcgataactgggatcaa
gcccactag
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