Shewanella alkalitolerans: K0J45_00800
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Entry
K0J45_00800 CDS
T09228
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shns
Shewanella alkalitolerans
Pathway
shns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K0J45_00800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shns03021
]
K0J45_00800 (rpoC)
03400 DNA repair and recombination proteins [BR:
shns03400
]
K0J45_00800 (rpoC)
Enzymes [BR:
shns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K0J45_00800 (rpoC)
Transcription machinery [BR:
shns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K0J45_00800 (rpoC)
DNA repair and recombination proteins [BR:
shns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K0J45_00800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QYJ97828
LinkDB
All DBs
Position
170239..174453
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEEMREELPSINSETRRKKITKRLKLIEAFYQSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFESVAEVEKAYRTG
VAELHARVKVRITETTISEDGERTESRRIVDTTVGRALLSQVLPKGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATVSGASVGINDMVIPDEKYSLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTETVINRDGEEETQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAEDVYYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVKVRSVISCDTDFGVCAACYG
RDLARGHLINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGTVKL
HNAKHVTNSDGKLVIVSRSSEIAIIDELGREKERYKVPYGTVLEKLEDATVNAGEVIANW
DPHTHPIVSEVAGSIKFVDMIEGVTMTRQTDELTGLSSIVVMDVGQRPTAGKEMRPAIRL
VGADGNDLMIPGTEVPAQYFLPGKAIVNQDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLVITPADGGKPYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCEITEAGDSEFLPGEQVEVSRVKIANRELEAQGKEPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYAYHTSRNQAAQNGPAEE
VPAISASEAEQNLADLLNLAGSPE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttgaaggcatc
aagatcggcctagcgtcgcctgatctgatccgctcttggtcatttggtgaagttaagaag
ccagaaaccatcaactaccgtactttcaagcctgagcgtgaaggtttgttctgtgcgcgt
atttttggtccagttaaagactacgagtgtttatgcggtaagtataagcgtcttaagcac
cgtggtgtgatttgtgagaagtgtggcgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacatcgatctagccagcccagtagcgcacatttggttcttgaagtctctg
ccgtctcgtatcggtttgatgctggatatgactctgcgtgatatcgaacgtgtgctttac
ttcgaatctttcgtagtgatcgagcctggcatgaccagcctcgagcgcggtcagatgctg
accgaggaaaactacctcgacgcactcgaagagtacggtgatgagttcgaagctaagatg
ggtgccgaggcagtacttgagctgctgcgtgctatcgatcttgagaaagagattgaagag
atgcgcgaagagctgccatctatcaactctgagactcgtcgtaagaagatcactaagcgt
ctgaagctgattgaggccttctaccagtctggcaacaagccagagtggatgatccttaag
gtgctaccggttctgccacctgatctgcgtccattggttccactggatggcggtcgtttc
gcgacttcagatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgtctgttagacctggctgcaccggacatcatcgtacgcaacgaaaagcgtatgctgcaa
gagtctgttgatgcgctattggataacggtcgtcgcggtcgtgcgatcacgggttctaac
aagcgtcctctgaaatctttggccgacatgatcaagggtaagcagggtcgtttccgtcag
aacctactgggtaagcgtgttgactactcaggccgttcggttattaccgtaggtcctact
ctgcgtctgcatcagtgtggtctgcctaagaagatggcactcgagctgttcaagccattc
atctacggcaagctggaaggtcgtggcctggctactaccatcaaagctgctaagaagatg
gttgagcgcgaagtaccagaggtttgggacgtactcgatgacgtgatccgtgagcatcct
gtgatgcttaaccgtgcaccaacacttcaccgtcttggtatccaggcgtttgagccggta
ctgattgaaggtaaggcgatccaactgcacccattggtgtgtgcggcatacaacgctgac
ttcgacggtgaccagatggcggttcacgtgccactgacgctagaagctcagttggaagca
cgttcactcatgatgtctaccaacaacatcctgtcacctgcgaacggtgagccggtgatc
acaccgtcacaggacgttgtattgggtctgtactacaccagccgtgagcgtatcaacggc
cgcggtgaaggcatggcattcgaatctgttgccgaagtagaaaaggcataccgtactggc
gtagccgagctgcacgctcgcgttaaggtacgtattactgagactactatctctgaagac
ggcgagcgcaccgagtcacgtcgtatcgtagatactaccgtgggccgtgccctgttgtct
caggttctgccaaaaggcctttcttatgatctggttaaccagaacatgggtaagaagcag
atctctaagctattgaacacctgttaccgtcagctaggtctgaaagataccgttatcttc
gctgaccaattgatgtataccggtttccacttcgcgaccgtttctggtgcgtctgtgggt
atcaacgacatggtgattccagatgagaaatactctctggttgccgatgctgaagccgaa
gtacttgagattcaagagcagttccagtcgggtcttgttaccgccggtgagcgttacaac
aaggttatcgatatctgggctagtgcgaacgaaaaagtttctaaggcgatgatggataac
ctgtctaccgagacagtgattaaccgtgatggcgaagaagaaactcaagcttcgttcaac
agcatctacatgatggccgactcgggcgctcgtggtagtgctgcacagattcgtcagcta
gcgggtatgcgtggtctgatggcgaagccagatggctcgatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctaaacgtactccagtactttatctctactcacggtgcgcgt
aagggtctagcggataccgcacttaagacagcgaactctggttacctgactcgtcgtctg
gttgacgttgcacaagacttagtggttatcgaagacgattgtggtacacacgaaggtctg
acaatgaagccgctgatcgaaggtggtgatgttgttgagccgctacgtgagcgtgtactg
ggtcgtgtggtagctgaagatgtttactacccaggtaccgaagatgtacttgcgccgcgt
aacaccctgcttgatgaagcctggtgtgacaagctcgaagaacactctatcgacgaagtt
aaggttcgttctgtaattagctgtgacacagacttcggtgtgtgtgcggcgtgttacggc
cgtgaccttgcacgtggtcacctgattaaccaaggtgaagccattggtgtggtagctgct
cagtcaatcggtgagccaggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatcgagagcgtctgcagaaaacaacgtacaggttaagaatgccggtacagttaagctg
cacaacgctaagcatgttaccaacagtgacggtaagctggttatcgtatcgcgttcatct
gaaatcgcgattatcgatgagctgggtcgtgagaaagagcgttacaaggtgccttacggt
actgtcctagagaagctggaagacgcaacggttaatgccggtgaagtcatcgctaactgg
gatccgcacactcacccaatcgtttctgaggtagcgggtagcatcaagttcgttgacatg
atcgaaggtgtcaccatgacacgtcagaccgacgagctaacgggtctatcttctatcgtg
gttatggatgtgggtcaacgtcctactgcgggtaaagagatgcgtccggcgattcgtctg
gttggtgccgatggcaatgacctgatgatccctggtaccgaagtaccagcgcaatacttc
ttgcctggtaaggcgatcgttaaccaagacgataacgcacaaatcgccgtcggtgacgcg
cttgcacgtattccgcaagaatcatctaagactcgcgatattaccggtggtctgccacgc
gttgcagacttgttcgaagcgcgtaagccgaaagagcctgccatcttggctgagtactca
ggtactatctcgttcggtaaagagaccaaaggtaagcgtcgtctagtgatcacacctgcc
gatggtggtaagccatacgaggagatgattcctaagtggcgtaacctgaacgtgttcgaa
ggtgagaaggttgagcgcggcgaagttatcgccgacggtccagaagctgcacacgacatc
ctgcgtctgcgtggtattcacaaggtggctaactacatcgttaacgaagtgcaagacgtt
taccgtttgcaaggcgtgaagattaacgataagcacatcgaagtgatcatccgtcagatg
ctgcgtaagtgtgagatcaccgaagccggtgacagtgagttcctcccgggcgaacaggtt
gaagtgtctcgcgttaagatcgctaaccgcgaacttgaagcgcaaggcaaagaacctgct
aagttcgagcgtgaactactgggtatcaccaaggcctcgttggcgaccgagtcgtttatc
tcggcggcatcgttccaggaaaccactcgcgtattgaccgaagctgccgtaggcggtaag
agcgataagctacgtggcctgaaagagaacgtgatcgtgggtcgtctgatcccggccggt
acaggttatgcgtaccacaccagccgtaaccaggctgcacagaatggcccggcagaagaa
gtgccggcaatcagtgccagtgaagcagagcaaaaccttgccgatctattgaacctggcg
ggcagccctgaataa
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integrated database retrieval system
