Shewanella alkalitolerans: K0J45_02345
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Entry
K0J45_02345 CDS
T09228
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
shns
Shewanella alkalitolerans
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shns03021
]
K0J45_02345 (rapA)
Transcription machinery [BR:
shns03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K0J45_02345 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
FtsX_ECD
Motif
Other DBs
NCBI-ProteinID:
QYJ98108
LinkDB
All DBs
Position
complement(507678..510584)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDI
IESHEGWSLKVSEIEEKNQLVIYHGIHTETGEEVSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLMVVDEAHHLEWTEEAPSRAYRVVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALASG
KRLPDEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVLYR
NSRASVKGFPTRIFNAHPQTMPAQYETAARVSDMMGGQTDLTAKVKQALSPEKLYQAFES
DSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYRDE
DKFTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVESLAARDQDTQLIGSVI
RLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQE
HPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPPTP
VRVLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFAQAAMK
QLTEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLKNQMVELGNYLDACQLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgttggattagtgataccgaatcggaactcggtttaggt
actgtcattggactcgaaggccgtatggtcaccctgatgttccccgccactgacgaaaac
cgcatgtttgcccgcgacgatgccccgctaacccgagtgatctataaccccggcgatatc
attgagagtcacgaaggatggagtctcaaggtcagcgagatcgaagagaagaaccagctg
gtgatctaccacggtatccacaccgagaccggcgaagaggtcagcctcagagagacgctg
cttaaccacaatattcgtttcaacaagccccaagacaggctatttgccggccagatcgat
cgtctggacagatttggcgtgcgctaccagagccaactgctgcgtcataagctggccacc
tcagatctgctgggcctacagggtccccgcgtcggcctgatcccccaccagcagtggatc
gcccatgaagtgggccagcgcttcgcgccgcgcgtcctgttagcggacgaggtgggcctg
ggtaagaccatagaagccggcctgatcatccaccagcagctgctgaccggccgcgccgag
cgtatcctgatcatagtgccagacaccctacgccatcagtggttggtggagatgctgcgc
cgtttcaacctgcgattctcggtgttcgatgaagacagatgcgtcgaggcctacgccgat
cacgacaaccccttctacacagagcagctggtgatctgttcactcgagctgctacggaag
aagaaacgcctggaccaggccctggatgccgactgggatctcatggtggtcgacgaagcc
caccacctggagtggaccgaagaggcgccgagccgcgcctaccgcgtggtcgaggccctg
agtgaagtggtccccggtgtgctgctactgaccgccacaccggatcagctgggccaccag
agccacttcgcccgtctgcgtctgctggatccggatcgtttctacgactatcaggccttc
ctcaaagaggaggagagctataaagaggtggcgagcgccgccgatgcgctggccagcggt
aagcgtcttcccgacgaggccgttgccagcctgaccgagctgctcaacgagaaagatatc
accccggcgctgcgtctgattgaagatgagagcgtcgataacgaacaacgcgatcaggcc
cgtagcgagctgctgcaggagctgttagacagacacggcaccggccgcgtgctctatcgc
aacagccgcgcctcggtgaaaggcttcccgacccgtatcttcaacgcccaccctcagacc
atgccggctcagtatgagactgccgccagggtgtctgacatgatgggcggccagacagat
ctgaccgccaaggtgaaacaggccctgagcccagagaagctgtatcaggccttcgagagc
gatagcgccagttggtggaagttcgatcctagggtcgactggctgatcgatttcctcaag
aaccatcgcagcaagaaggtgctgatcatcgccagccaggcggagaccgccctgagcttg
gaagaagccctgcgtacccgcgagggcattcaggccaccgtcttccacgaaggtatgtct
atcatagagcgcgacaaggccggcgcctacttcgctcaggaaagcggcggcgcccaggcg
ctgatctgtagtgagataggctcggaaggtcgtaacttccagtttgccagccatctggtg
ctgttcgacctgccgctgaatccggatctgctggagcagcgtatcggccgtctggaccgt
atcggtcaggccaacgatgtcgagatccatctgccttacctggccaacacggcccaggaa
aacctgatgaactggtaccacaagggactgaacgccttcgagcagacctgccctaccggc
catattctgtttaacgagttttccgaggagctgctgacccagctggtctaccgcgacgaa
gacaagttcacccagctgctcaaccacacccaaagccgctacaaggcgctgaagaaggcg
atggaacagggccgtgacaagctgctggagatcaactcccatggcggcgacaaggcgcaa
aagttagtggagagcctggcggcccgcgatcaggacacccagctaatcggctcagtgatc
cgcctgtgggacatcataggcgtcgagcaggaagacagcggcgagaacgccatcgtgctg
catccgagcgaacacatgatgttcccgacctacccgggtctgcctgaagatggcatcacc
gtcaccttcgaccgtgagatggcgctgtcacgcgacgatatcgccctgatcacccaggag
cacccgctggtacagacggggctggatctgatcacctcttctgagacaggcaccaccagc
gtggccgtgctcaagaacaaggcactacctgcgggcaccatcttcttggagctgatctat
atggccgatgcctcggcgccgcgttcgagccagctctaccgctacatgccaccgaccccg
gtacgtgtgttgctggacaagaatggcaacaacctgtcgcagaatgtcagctacgagagc
ttcgacaagcagctgagcgcggtcaaccgccatatcgccagcaagctggtgaacgcctcg
caaaccctgctgcatccgctgtttgccaagggtgaggagtttgcccaagcggcgatgaag
cagctgaccgaagaggccagcaacaagatgacccagcagctcaccgcagagctggaacgt
ctggaggccctcaaggcggttaatcccaacattcgtgacgaggagctggagcacctgaaa
aatcagatggtcgagctgggcaactacttagatgcctgtcagctacaactggacgccgtg
cgtctggtgctagtcagtcacgcctaa
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