Shewanella alkalitolerans: K0J45_02685
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Entry
K0J45_02685 CDS
T09228
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shns
Shewanella alkalitolerans
Pathway
shns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0J45_02685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shns03019
]
K0J45_02685
03009 Ribosome biogenesis [BR:
shns03009
]
K0J45_02685
Enzymes [BR:
shns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0J45_02685
Messenger RNA biogenesis [BR:
shns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0J45_02685
Ribosome biogenesis [BR:
shns03009
]
Prokaryotic type
rRNA helicases
K0J45_02685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QYJ98172
LinkDB
All DBs
Position
complement(596606..598405)
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AA seq
599 aa
AA seq
DB search
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE
RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQLCQQLEVDTEV
LAAALLNMVQQERPLQLPPIQERQRDSRDERNSRDRGDRSDRAPRGRRESRPTPANLGQA
DTLKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPE
GMPKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRRRKPVGERKSHRKGNRDNG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
ctcgacgagctaggttatgaaaaacctaccccgatccaggccgccagtatcgaccccctc
atggcgggtaaagatattctaggccaggcgcaaaccggtacgggtaaaaccggtgccttt
gccctgcccctgctcaacgctatcgatcctaaccgcaacgtaccacaaattctggtactg
gcgccgacccgcgaactggcggtacaggttgccgaagccttcggtagctactctaaattc
atgaaaggcctgcacgtactgccaatctacggcggtcagagcatgcatcaacagcttaac
gccctgcgtcgtggccctcagattgtcgtgggtacaccgggtcgtgtcatggaccacatg
cgtcgtggcaccctgaagctagagacactcaacgccttggtactcgatgaggccgatgaa
atgctcaagatgggctttatcgacgacatcgagtggatcctggagcacacgccacaggag
cgccaactggcgctgttctcggccaccatgcctgagcagatcaagcgcgtcgccaacaag
tacctgcaaacgccggtacacatcagcatcgccgctagccacaccacggttgagtctatc
gagcagcgcttcgtgcaggtgtctcagcacaacaaactcgaggctctggtacgcgtactg
gaagttgaaaacaccgaaggtatcatcatcttcgtacgtacccgtaattcttgtgtcgaa
ctggccgagaagctggaagcccgcggctatgcctcttcgccactgcatggcgacatgaac
caacaagctcgtgagcgcgccgtcgatcagcttaagcgtggcaagctggatatcctgatc
gccaccgacgtggccgcccgaggtctggacgttgagcgtatcggtcacgtgatcaactat
gatatcccctacgacaccgaagcctacgtacaccgtattggtcgtaccggccgcgccggt
cgtaccggtatggcgattctgttcgtcacccacagagagatgcgcatgctgcgcaccatc
gagcgtgcgaccaagagccgtatctcaccgatgaacgtaccaagccctgagacagtggcc
gagcgtcgtctgtcacgtctgggtgagcaggtttcgaacaccatagacaacgagtcgctg
gacttcatgcatggcgccgttgcccagctgtgtcagcaactggaagtggacaccgaagtg
cttgccgccgcactgctcaacatggtgcagcaggagcgtcctctgcagctgcctcctatt
caggagcgtcagcgcgatagccgtgacgagcgcaactcgcgcgaccgtggcgaccgctca
gatcgtgctcctcgtggccgccgcgaatcgcgtccgaccccggcaaacctgggccaagca
gataccctgaaagatcatccagacgtcaagatgtgccgttacgtgctcgacgtgggccgt
gaccatggcgtgggtgtaggcaacatcgtcggcgccgttgccaacgaagccaacatcgac
agccgttacataggtcagatccaattgttcgatcagatcacctcgatcgacctgccagaa
ggcatgccaaaggatgtcctgcaacacctgaagaaggtacgcgtatgtggtaagccgcta
aacatccgcgaagcgggcagcgaaatcgtcaacgccagcgatgacaaccgagcaccacgt
cgtcgtaagcctgtgggtgagcgcaagtcacaccgcaagggcaacagagacaacggctaa
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