Shewanella alkalitolerans: K0J45_03920
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Entry
K0J45_03920 CDS
T09228
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
shns
Shewanella alkalitolerans
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shns03009
]
K0J45_03920 (srmB)
Enzymes [BR:
shns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0J45_03920 (srmB)
Ribosome biogenesis [BR:
shns03009
]
Prokaryotic type
rRNA helicases
K0J45_03920 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SNF2-rel_dom
AAA_11
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYJ98396
LinkDB
All DBs
Position
complement(873196..874416)
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AA seq
406 aa
AA seq
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MQFEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPAL
QHLLDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQAL
KENIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKH
NMLFSATLEGGGVSRFAEMLLTNPVTIETKPPRSEKAKIHQWMHLADDKEHKFALLCDIL
KREEVSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVLL
ATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAKI
ERYIEQPLKRRVIDSLRPKHKEAKVPTKKKVKSSDKKSPKKAKKKR
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccaccttgacgacaccctcctcgagtcgctcaaggcgatgggc
catcttgccccgaccaccatccagcaacagacgattcccctagccctggagcacaaagat
atcctggcgagggcaccgacaggcacaggcaagaccgccagcttcctgctaccggcgctg
caacatctgctggactttccccgccgctactcgggccaagcgcgcgtgctgatcctcgct
ccgacccgtgagctggcaagccaggtacacagatacgccagccatctggccaccggcctg
ggactggatatcgccatcatcacgggcggtgtgccttacgctccgcaggagcaggcgctc
aaggaaaatatcgacattctggttgccactcccggccgtttgatggagtacctggacaag
gagctcttcgacgcccaatcggtggagatcttggtactcgacgaggccgaccgcatgctg
gacatgggtttctcctccgcggtgcagtctatcgccatcgaggcgcagcagcgtaaacac
aacatgctgttctctgcgaccctggaaggcggcggcgtgagccgcttcgccgagatgctg
ctaaccaatcctgtgaccatagagaccaagccaccccgcagcgagaaggccaagatccat
caatggatgcacctggccgatgacaaagagcataagtttgccctgctgtgcgacatcctc
aagcgtgaagaggtcagccgcgccatcgtcttcgtcaagacccgcgaggtcgtagccagc
ctggaaggtcaactgcaacaggccggtatccactgcgccttcatgcgcggtgacatggag
cagaaggcgcgctttcaggcgctgggccgcttcaccaagggcgaagttaacgtgctgctg
gccacagacgtggcggcccgtggtatcgacatcgatggcatcacccatgtgatcaacttc
gatatgccgcgctcggcagacacctatgtgcaccgcatcggccgtaccggccgcgccggt
aacaagggcacggccatctctctggtcgaggcccacgacatgcgcgtcgtcgccaagatc
gagcgttatatcgagcagccgctgaaacgccgggtgatcgactcgctgcgtcctaaacac
aaggaagctaaggtgcccaccaagaagaaggtgaagagcagcgacaagaagagcccgaag
aaagccaagaagaagcgctag
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