Shewanella alkalitolerans: K0J45_04980
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Entry
K0J45_04980 CDS
T09228
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
shns
Shewanella alkalitolerans
Pathway
shns02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0J45_04980 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shns03021
]
K0J45_04980 (rpoD)
Transcription machinery [BR:
shns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0J45_04980 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
TMEM120A-B
FAP206
Motif
Other DBs
NCBI-ProteinID:
QYJ98596
LinkDB
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Position
complement(1122813..1124654)
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AA seq
613 aa
AA seq
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MEQTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEQAP
DADEIMMSEDSTDEDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIISGFVDPNAEDMAPTATHI
GSELSDDDLDDEDDEGDDEDEDGDEEDSPKGPDPEEARERFTQLREAHEKALKVIELKGR
EHPEATAALFDIGEIFKEFRLVPKQFDRLVKNMREMMDKVRIQERLIMKLCVEQAKMPKK
NFVKVYTSNESSIEWFNEEIAAKKPYAEGLEMVAEDVQRCRAKLDAIENETGLAIAAIKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESL
KNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEILKSFLDE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaactccgcagtcgcaacttaaattgttgcttgccaaaggtaaagagcaaggt
tatttaacctatgcagaagtgaacgatcacttgcctgcagatatggtcgactcagaccag
atcgaagatattatccagatgattaatgacatgggtattcgcgtctatgagcaggcgccg
gatgccgatgagatcatgatgtctgaagacagcaccgatgaagatgctgccgaagaagct
gccgcggctctggctacggttgaagctgaactgggtcgtaccacagatcccgtgcgtatg
tacatgcgcgagatgggtacggtagaacttctgacccgcgaaggcgaaatcgtaatcgcc
aagcgtatcgaagaaggtatcaacacggttcaggcgtctgtagccgaatatcctcaagcg
atcgctatgatccttgagcagtacgaccgctacgaagctgaagaagtcagactatcagac
attatctctggatttgttgaccctaatgccgaagacatggcgccgacggcgacccatatc
ggctcagaattgtcggacgacgatctcgacgacgaagatgacgagggcgatgacgaggac
gaagacggcgatgaagaagattcgccaaaaggcccggatccggaagaagcgcgcgagcgt
ttcacccagctgcgtgaagcacacgaaaaagccctaaaagtgattgagcttaaaggtcgt
gaacaccctgaagcgacagccgctctgttcgacattggcgagatcttcaaagagttccgc
ctggtacctaagcagttcgaccgcctggtgaagaacatgcgcgaaatgatggacaaggtg
cgtattcaagagcgcctcatcatgaagctgtgtgtcgagcaggccaagatgccgaagaag
aacttcgttaaggtctacacctctaacgagagcagcatcgaatggtttaacgaagagatt
gccgccaagaagccttatgccgaagggctggagatggttgccgaagacgttcaacgttgc
cgcgccaagctagatgccatcgagaatgaaaccggtctggccattgccgccatcaaggat
atcaaccgtcgcatgtctatcggtgaagccaaggctcgccgcgcgaagaaagagatggtt
gaggctaacctgcgtctggtaatttctatcgcgaagaaatacaccaaccgtggcctacag
ttcctggatctgatccaggaaggtaacatcggcctgatgaaggcggtagacaagtttgaa
taccgtcgtggttacaagttctcgacctatgcaacctggtggatccgtcaggcgatcacg
cgttcgattgccgaccaggcacgtaccattcgtatcccggttcatatgattgagaccatc
aacaagctcaaccgtatcagccgtcagatgctacaagagatgggacgcgagccgtcacct
gaagagctggccgagcgcatgttgatgccggaagataagatccgcaaggtactcaagatt
gccaaagagcctatctcaatggaaacccctatcggcgatgatgaagattcgcatttaggt
gatttcatcgaggatactaccctcgagttgccattggacagcgccacaggtgagagcctg
aagaacgccacccacgaagtcctcgccggcctgaccgcccgtgaagccaaagtactgcgt
atgcgtttcggtatcgatatgaacaccgaccacaccctagaagaagtgggcaagcagttt
gacgtgacccgtgagcgtattcgtcagatcgaggctaaggcgctgcgtaagctacgtcac
ccgtctcgctcagagatcttgaaatccttcctggatgaatag
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