Shewanella alkalitolerans: K0J45_10905
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Entry
K0J45_10905 CDS
T09228
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
shns
Shewanella alkalitolerans
Pathway
shns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0J45_10905 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shns03400
]
K0J45_10905 (recC)
Enzymes [BR:
shns01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0J45_10905 (recC)
DNA repair and recombination proteins [BR:
shns03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0J45_10905 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
mRNA_triPase
Motif
Other DBs
NCBI-ProteinID:
QYJ96077
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All DBs
Position
2437275..2440889
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AA seq
1204 aa
AA seq
DB search
MLYLVQSNRMEALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAA
LEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFTPLANYLKDDA
ILTDNAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKESSLDANQQWQS
LLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLE
VLYFLAKRIDVVMLNLSPCQHYWGDIVDPKLRARMALQYGDKQQLAIDWESKLEVGNPLL
ANNGKMGRELLDLILELPENDTNFNFECYQDPGSNTLLHGVQQDILELCTRGETLGPDAE
LYLTTKGRRVLKNDDDSLTLRSCHSPLRELETLHDHLLEKLSQSDGLAPKDIVVMMPDVA
AYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSFLHLLGLNKSRFALTDILGILEV
PAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPAFEHNSWAFGIKRLILGYS
FSDEAPIYHDSLALPGVEGQSAQALGKLLNFIEAIDEFNLALGEHCPLSVRITQLQTLVE
TFYDCVDEELSQKQELLQAITRLSEELTATQYQSELELEVMQNWFTRHLTESRVGQRYLA
GSVNFCTLMPMRSIPFKLVCLLGMNDGVYPRVQHPVGFDLVAQEGPRKGDRSRRLDDRYL
FLEALLSAREQLYISYIGHSERDNSERIPSMLVSELIEYCQLCYLPESCAHLLNKASEDD
TSTADIAKIEQAILDQLIITMPLQPFDERLYLADESEGAECEGAKSEPRRLRQSYSEQWC
PSAVAEDDKQHDGEQGAKPASAGHFIEAPLTLVADEDKGEPLELSALIRFYRNPAQYFFN
RTLKLDLNLSIQADENDEPFALNPLSRYQLQSTLIEDAVKSGDERPSNELLERLRLSGQL
PLAPFDDLLLKQYQHDIRALVGRTLYLQGESSHTQDIDLLLSDSAATALVGRIDGVSAKG
LVNYRPGTANARDLIRVYLRHLCLNASLNTCLNASLKTSLSDNTNMESHEATPWQRHSYL
LDIGHFHAFAPITPEQALNQLSLWAEHYHQGQSQPLPFMPRTAFAYVEAEGDHIEKLIAA
QPQWLDEQSNLGEGQEAHYQRLFTFPDDFSEAGFGTIASTLLSPMLSLYHKAPLSELADF
VEGQ
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgctgtatttggtgcaatcgaatcgaatggaagctttggcagagctgctcgccaacgag
ctacagacgcccctgccgggtcagtcgccgctgagcaatgagcagatcttggtccaaagc
cccggcatgtccacctggctcaggctcgccatcgccaaacaaaaccaggtcgcggcggcg
ctggagttccccctgccgtcgagctttatctggcaactctgccaccagctgctgccggat
gttcccaaggagaacgcctttaccaaaccggccatgacctggaagctgatggaactactg
ccaggcctcctgtctcaggaggtgtttaccccgctggcaaactacctgaaagacgatgcc
atactcacagacaacgcggcgccgcactcgttaaaactgtttcagctttgcagccagata
gccgacatcttcgaccaatacctggtctatcgccccgactggatcttggcctgggaacag
ggtgaggatcgactgccccccaaggagagttcgctagatgccaaccagcagtggcaaagc
ctgctgtggcgcgaacttattcactacaatcatcacacgctgaaccagagccgctatcac
agggcgaacctgcaccaggcgctgtttgatgccttaagcgatcccctgtgcgatcttagc
aagttgccaccgcgcctgtttgtctttggtatctcctccatggcgccgcagaccctggaa
gtgctctactttttggccaaacggatcgatgtggtgatgctcaatctaagcccctgccaa
cactattggggcgacatagtagatcctaagctcagggcgcggatggcgctgcaatatggc
gacaagcagcaactggccatcgattgggagagtaagctcgaggtgggcaatcccctgctt
gccaacaacggtaagatgggccgcgagctgttagaccttatcctggagttgccggaaaac
gataccaacttcaacttcgagtgctatcaagatccgggctcaaacaccctgctccacggc
gtgcagcaagatatcttggagctttgcacccggggagaaaccctaggaccggacgccgaa
ctctatctcaccaccaaaggcagacgagtacttaagaatgacgatgattccctgaccctc
aggagctgtcacagcccactacgggagcttgagacactgcacgatcatctgctggagaag
ttgtcacaatcggatggtctcgcccccaaagatatcgtagtgatgatgcctgatgtagcg
gcctacgcgccctacatagatgcggtgtttgcctccaagcgcggcgatcattttatcccc
tatgccattgccgatcgcggcgcggcccaggaatccccgctgatcaacagcttccttcac
ctactgggccttaacaagagccgttttgcgctgacggacatcttaggcatactcgaggtg
cccgccgtgatgcgccgcttcgacctggacgatgatgatctcctgctcatccgccgctgg
ctggagcaggcgggcgtgcgctggggacgggatcagcacagccgtcaggcacagcagctg
cccgccttcgaacataactcctgggcctttggcatcaagcggcttatcttaggctatagc
ttcagcgatgaggcgcctatctaccatgacagcctggcgctccccggcgtcgaagggcaa
tcggcccaggcactgggtaagctgcttaactttatcgaggcgatcgacgagtttaatctg
gcgctcggcgagcattgccccttaagcgtgcgcattactcagctgcagaccctggtagag
accttctacgactgcgtcgatgaggagctgagtcagaaacaggagctgttacaggcgatc
acccgtctgagtgaggagctcaccgccacacagtatcagagcgaactcgaactcgaggtg
atgcagaactggtttacccgtcacctcaccgagtcccgggtaggacagcgttatctagcc
ggtagcgtcaacttctgtaccctgatgccgatgcgctccatcccctttaagctggtctgt
ctgctggggatgaacgatggcgtctaccccagggtacagcacccggtcggcttcgacctg
gttgcccaggaagggccgcgtaagggcgaccgttcccgcaggctggatgacagatacctg
ttcttagaggcgctgctctctgccagggagcagctctacatcagctatatcggccatagc
gagcgggataacagtgagcgcatcccctcgatgctggtgtctgagctcatcgaatactgc
cagctctgctatttgccggaaagttgtgcccacctgctgaataaagcgagtgaagatgac
acaagcacggcagatatcgccaaaatcgagcaggccatcttagaccagctaatcatcacc
atgccgctgcagcccttcgatgaacgcctctatctggcagacgaatctgaaggcgcagag
tgtgaaggcgcaaagagtgagccaagacgtcttcgccagagctatagtgagcagtggtgc
cctagcgccgttgctgaggatgataagcagcacgacggggagcagggtgccaagccagca
agtgctggtcatttcatcgaggcgccgctgactctggttgccgatgaagataagggtgaa
ccacttgagctctcggcgctgatccgcttctaccgtaatccggcgcagtattttttcaat
cgcaccctcaagctggatcttaatctcagcatacaggcggatgaaaacgatgagcccttc
gccctcaatcccctgtctcgctatcagctgcaatcgaccctgatagaagatgcggtcaaa
tcgggcgatgagcggccatcgaatgaactactagagcggctgcggctctcgggtcagttg
ccccttgccccctttgatgatctcctgcttaaacagtatcagcacgatattcgcgccttg
gtcggtcgcaccctctatctacagggagagagcagccatacccaggatatcgacctgctc
ttgagcgatagcgccgcaacggctctggttgggcgaatcgacggcgtcagcgccaaggga
ctggtcaactaccgtccggggacggcaaacgcaagggatctgatccgcgtctatctgcgt
catctttgtcttaacgctagtcttaacacctgtcttaacgccagcctcaaaaccagtctt
agcgacaataccaacatggaaagccatgaagcgacgccctggcagcgccacagctatctg
ctcgatatcggccatttccacgccttcgcgccgataacgcctgagcaggcgctcaatcag
ctctcgctctgggccgagcattatcatcaggggcagagccagcccctgcccttcatgcca
agaaccgcctttgcctatgtcgaggctgaaggtgatcatattgagaagctgatcgccgcc
cagccacaatggctggatgaacaatctaacctgggtgaaggccaggaggcccactatcag
cggttgtttactttccccgatgactttagcgaggcaggctttggcaccatagccagcacg
ctgctctcacctatgctgagtctttatcacaaggcgccgctgagcgagttggccgatttc
gtggagggccaataa
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