Shewanella alkalitolerans: K0J45_11375
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Entry
K0J45_11375 CDS
T09228
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shns
Shewanella alkalitolerans
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shns03032
]
K0J45_11375 (topA)
03400 DNA repair and recombination proteins [BR:
shns03400
]
K0J45_11375 (topA)
Enzymes [BR:
shns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K0J45_11375 (topA)
DNA replication proteins [BR:
shns03032
]
Prokaryotic type
DNA Topoisomerases
K0J45_11375 (topA)
DNA repair and recombination proteins [BR:
shns03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K0J45_11375 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
QYJ96164
LinkDB
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Position
complement(2562769..2565417)
Genome browser
AA seq
882 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSSSDASSSTKSPAEVRKMSP
EEKAKYKADKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLATDL
DREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQLNTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELTTLSNE
GLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVTSREVKATSSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGKEYGDRYLPDAP
IRYGSKEGAQEAHEAIRPSDVNVSASSLSDMERDAQRLYELIWRQFVACQMTPAKYDATR
LTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEDNTLPMVAEGDVLALEELLPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSESLI
GSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMRPNE
MVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDAE
TDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIECD
RCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYFVL
RDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVADEDGNKAVVRFS
RKTKEQYVATEIDGKATGWTAKFVGGKWVSEAKAKPKAKKKA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagccaagactattaacaaatat
ctcggcaaagattacatcgtaaaatcgagtgtgggtcacatccgtgatctccctacctca
tcctccagtgacgccagttcgtcgactaaatcgcccgccgaagtgcgcaagatgtccccc
gaagagaaggctaaatataaggctgacaaagcgaagaaagccctggttgcgcgtatgggt
gtcgacccagagcgaggctggaaggccaagtatcagacgcttccgggcaaagagaaagtt
gtcaaagaattacagtcacttgctgaaaatgcagatcatatcttcctcgcaaccgatttg
gatagagagggggaggcaattgcatggcatcttcaagaagtgattggtggggatccagag
cgctaccagcgcgtggtctttaatgagatcacaaagagcgcgattcaagaggcgttcagc
catccgtcgcagctcaacaccaatatggttaatgcccagcaggcgagacgttttctcgac
cgcgtggtgggttttatggtgtcacctctgctgtggaaaaaagtggcccgtggcctctcc
gcagggcgtgtgcaatcggtagcgacgcgtttggtggtcgagcgtgaaggcgagatcaag
gcgttcgtaccagaagaattctgggacattcatgcagagctgacgaccttgagcaacgaa
gggctcaagatgcaggtggctaagtttaagggggataactttaaccctgtaaacgaagcc
caggccatggtggcggttaacgcactaaaagacagtaagtaccaggttactagccgtgaa
gtcaaagcgacttctagcaagccctcggcgccctttatcacatcgacccttcagcaggcg
gccagtacccgtctcggctttggtgtgaagaagaccatgatgatggctcagcgtctctat
gaggcgggtcatatcacctatatgcgtaccgactcgaccaatttgagtcaggaagccctc
gacagtgtgcgtgacatgatcggcaaggagtatggtgataggtatttgcctgatgcaccg
atccgttatggtagcaaagagggggcccaggaggctcacgaagcgatccgtccgtctgat
gtgaatgtcagtgccagcagccttagcgatatggaaagagatgcccagcgtctctatgag
ttgatctggcgccaattcgttgcctgtcagatgaccccagcgaaatacgatgcgacgcgt
ctgactgtcaccgcaggggattacgaactcaaggccagtggccgtacccttaagtttgac
ggttggactcgggtccagactgcgcttaagaagaaaaacgaggaagacaacaccctgcca
atggttgccgagggtgatgtgctggcattagaagagttgttacctaagcagcatttcact
aaaccaccggcgcgttatagcgaagcatcactggtaaaagagctcgagaagcgcggtatt
ggccgtccgtcgacctatgcgaccatcatctcgaccattcaagaccgtggctatgtgaag
gtcgagaatcgtcgtttctacgccgagaagatgggggagatcgttagcgagagcctcatc
ggcagcttcgaagagctgatgagttacgacttcaccgccggcatggagcagaccctggat
aacgtggcccagggccagctcgaatggaagaaggtgctggataacttctataaaggcttg
accgctcagcttgaaaaggccgaactaccgccggaagagggcggcatgcgccctaacgag
atggtgctgaccgatatcgcctgtccgacctgtggacgtccaatgggcattcgtaccggt
actaccggcgtgttcctgggctgttcaggctatgccttgccgccgaaagagcgctgtaag
acgaccatgaatctgacgccgggtgaagaggccgtcagcgaaaacagcgaagatgccgaa
accgatgcactgcgcgccaagcacagatgtgatgtttgcggcacggcgatggacagctat
cttatcgatgagaagcgcaagctgcatgtgtgtggtaacaaccccatctgtggcggttac
gaagtcgagcaggggcagtttaagattaagggttacgaagggccgattatcgaatgcgac
cgctgtggcaacgatatggagctgaagaatggccgttttggtaagtattttggctgtact
aacagcgagtgtaagaatactcgtaaactgttgaaaaatggtgaagtggctccgccaaag
gaagatccaatccacctgcccgagctgaaatgtaccaagtctgacggctatttcgtgctc
agagacggcgccgcaggcatcttcttggccgcgagcactttccctaaatcacgtgaaacc
cgcgcgcctttggtggaagagctggtgaagtaccgtgagctcctatggcccaagtatcaa
tatttggccgatgcccctgtagcggatgaagacggtaataaggcggttgtgcgctttagc
cgtaagaccaaggagcagtatgtggcaaccgaaatcgacggtaaggcgaccggttggacg
gccaagtttgtcggcggcaagtgggtcagcgaagccaaggctaagccaaaggcaaagaag
aaagcctaa
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