Shewanella alkalitolerans: K0J45_13470
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Entry
K0J45_13470 CDS
T09228
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shns
Shewanella alkalitolerans
Pathway
shns03030
DNA replication
shns03430
Mismatch repair
shns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0J45_13470 (dnaE)
03430 Mismatch repair
K0J45_13470 (dnaE)
03440 Homologous recombination
K0J45_13470 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shns03032
]
K0J45_13470 (dnaE)
03400 DNA repair and recombination proteins [BR:
shns03400
]
K0J45_13470 (dnaE)
Enzymes [BR:
shns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0J45_13470 (dnaE)
DNA replication proteins [BR:
shns03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0J45_13470 (dnaE)
DNA repair and recombination proteins [BR:
shns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0J45_13470 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QYJ96544
LinkDB
All DBs
Position
complement(3070063..3073536)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA
GIKPIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAW
LERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEER
YLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYF
RSQDEMCKLFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVEVSKKGL
EERLEFLFPDEAQRAERRSEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPA
LPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
QFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFTVDDDLNIVYGIGAIKG
VGEGPVESILKAREDGPFVDLFDFCARVDLKKLNRRVIEKLICAGALDNLGPHRAAMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTARNIIDMGEARSHFAQ
AVEVDLDGTSITPEWLGQFQQAVEPWKAGSVPLVINYAQPTAKAQFRLGDEWRVNPTDEL
MLALETLTGSDKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacctcgtttcgtgcacctgcgcgtacacagtgatttttccatgtctgatggc
ctcgccaaggtcaagcccattctcgccaaggccagtgaagatcagatggccgccctggcc
ctgaccgacaacactaacctctgcggcctggtgaagttttatggcggctgtcacggcgct
gggatcaagcccatcgtaggttgtgacttcttcatgctggtgccaggattcgaggatgag
ttctgctccctgaccgtgctggcgatgaataacgaggggtataagaacctcaccctgctg
atcagtgatgcctatctgcgtggccatgtgaaagacagggcggtgatcgaccaggcctgg
ctggagcgctacagcgaagggctgatcctgctctccggcgccaaagatggcgacgtcggt
aaggcgctgctcaagggtaaccagggccaggtggactctctggtcgccttctatcagacc
cacttccccgaccgttattatctcgagcttatccgcaccgggcgccccgacgaggagcgt
tatctgcatatggcagttgagctggcgggcgagaaagacctgcccgtggtcgccaccaat
caggtggtgttcatacagcctgagcagttcgaagcccatgagatccgcgtggccatctcg
gatggtttcaccctggcggacccaaggcggccgcgccgctacagcgagcagcaatatttc
cgcagccaggatgagatgtgtaagctatttgacgatatccccgaggcgctacaaaacagc
gtggagatcgccaagcgctgtaacgtcacagtgagactcggtgaatacttcctgccgaac
ttccccaccggcgatctctccatcgaagattttctggtcgaggtctccaagaagggccta
gaggagcgtctcgagttcctctttcccgatgaggcacagcgcgccgagcgccgcagtgag
tatgacgagcgtctcgatgtcgagctgacggtaattaacaacatgggattccccggctac
ttcctcatcgtgatggagttcatccaatggggtaaagacaacggtatccctatcggcccc
ggccgtggttcgggggcgggttctctggtggcctatgcgcttaagatcaccgacctcgac
ccgctggaattcgacctgctgttcgaacgtttccttaacccagaacgtgtttcgatgccc
gacttcgacgtcgacttctgcatggacagacgcgacgaggtgatcgatcacgttgccgag
ctctatggccgcgacgccgtgtcgcagatcatcaccttcggtaccatggcggctaaggcc
gtggtgcgtgacgtgggccgtgtattgggtcacccctatggcttcgttgaccgcatctct
aagatgatcccagcggagcccggcatgaccttggccaaggcgttcgaggccgaaccggcg
ctgcccgaggcctatgatgccgatgaagaggttaaagatctcatcgacatgtgccgggtg
ctggaaggggtcactcgtaacgcgggtaaacacgccgggggcgtggtgatcgccccgacg
gtcatcaccgattttgcgccgctctactgtgacgccgagggccacaacccggttacccag
ttcgataagaacgacgtagaaaccgcaggtctggtgaagttcgacttcctgggtctgagg
accctgaccatcatcgactgggcgctgcagatgatcaatccgcatctggcgaagcagggc
aaggagccagtgcgtatcgaggcgattgttttggacgacccggcctccttccgtctgctg
cagcgctatgaaaccaccgccgtattccagctggaatcccgcggcatgaaagatctgatt
aagcgcctacagcccgactgcttcgaagatatgatcgcactggtggccctgttccgtccc
gggccgctacagtcgggcatggtagataacttcatcgagcgtaagcacggccgtgaagag
gtttcttatcccgaccagcaatggcaacacgagagccttaagcccattctggagcccacc
tacggcatcattctctaccaggaacaggtgatgcagatcgcccaggtgctggcgggctac
accctgggcggcgcggacatgctgcgccgtgccatgggtaagaagaaacccgaggagatg
gccaagcagcgtagcgtcttcgaagagggcgcggtgaagaacggcgtcgatggcgagttg
gcgatgaagatcttcgacttggtggagaagttcgccggttacggcttcaacaagtcgcac
tcggccgcctacgccctggtgtcctaccagacgctctggctcaagacccacttcccggcg
cagtttatggcggcggtgatgtcggcggatatggacaatacggacaagatcgtgaccctg
gtggacgagtgtgagcgcatgggcttgccgctgttgccgccggacgtcaacaagggcctg
ttccgcttcacggtagatgacgacctcaatatcgtctatggtatcggcgccatcaagggc
gtgggtgaaggcccggtggaatcgattcttaaggcgcgggaggatgggccattcgtggac
ctgttcgacttctgcgcccgggtcgatctcaaaaagcttaatcgcagagttatcgagaaa
ctgatctgcgccggcgccttggataacctggggccgcaccgcgccgccatgatggcgact
ctgcctgaggcgatccgcgccgccgatcagcatgccaaggccgaggcgattggtcagcac
gacatgtttggcctgctcaacagcgagccggaagacaacaagcagcagtttgtgcactgt
actccttggccggacaaggtgtggctcgagggcgaacgggagaccttaggcctgtatctg
accggtcacccgatcaatcagtatctcaaggagctcaagcattacacctcgggcaggctc
aaggatgtgcatcccaccgagcgcggcaagaccaccaaggccgccgggctcgtggtggcg
acccgtgtgatgatgaccaaacgcggctccaagatgggcctggtcaccctggacgacaag
agtgcgcgtttggaggtgatgctgtttaccgaggcctttgagaaatttggtgagctgctg
gagaaagacaggatcttgatcgtcgaaggggaggtgagtttcgatgacttctccggcggc
aatcgcatgacggcccgtaacatcatcgacatgggcgaggcgcgcagccacttcgctcaa
gcggtagaggtggatctggatggcaccagtatcacaccagagtggctcggccagttccaa
caagctgtcgagccctggaaggcgggcagtgtgcccttggtgatcaactatgctcagccc
accgccaaggcccagtttaggctgggggatgaatggcgggtcaacccgaccgacgagctg
atgctggcactggagacgctgaccgggtctgacaaggtaaggatcctcttctag
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