Shewanella alkalitolerans: K0J45_14485
Help
Entry
K0J45_14485 CDS
T09228
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shns
Shewanella alkalitolerans
Pathway
shns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0J45_14485 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shns03019
]
K0J45_14485 (pnp)
03016 Transfer RNA biogenesis [BR:
shns03016
]
K0J45_14485 (pnp)
Enzymes [BR:
shns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K0J45_14485 (pnp)
Messenger RNA biogenesis [BR:
shns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K0J45_14485 (pnp)
Transfer RNA biogenesis [BR:
shns03016
]
Prokaryotic type
tRNA degradation factors
K0J45_14485 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
S1_2
KH-I_KHDC4-BBP
KH_KhpA-B
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QYJ96728
LinkDB
All DBs
Position
complement(3318515..3320617)
Genome browser
AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAG
TENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEE
LVAKVKDLAEAGLTEAYQIVVKQDRYAQVDVVKTAAKEALLAENPDADAREIDGLLGSLE
KKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI
SGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN
GDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEAASE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgaatatggtcagcacacagtcacgctagagactggg
gttattgcacgtcaagcagacgcagctgttttggcaagtatgggcgatacaacagtattg
gttactgttgttggcaagaaagctgaagagccaggtcgtgactttttcccgttaaccgtt
aattaccaggaaaaaacttacgctgcgggtaaaatccctggtggattcttcaagcgtgaa
ggtcgtccatctgaaggcgagaccctcactgcacgtctgattgaccgtcctattcgtcct
ctattccctaatggttttaagaacgaagttcaggtgatcatcactgtggtttctgttgat
ccagaaatcagcccagaagtgatctctatgatcggtacttctgcggcactgtctatctct
ggcatcccatttaatggtccactgggttctgctcgtgtgggttatgtcgatggcgaatac
atcctcaacccaacggtttcacagctagaaaacagccagctggagctttctgttgccggt
actgaaaatgcagtacttatggttgagtctgaagccgatgcgctgccagaagaagtgatg
cttggcgccgtggtttatggtcatgagcaacagcaagttgttatccaggcgatcaaagag
ctaaaagccgaagttaacaagccaatgtgggactggacagcgccagtacaaaacgaagag
ttggttgctaaggttaaagatttggctgaagcgggtctaaccgaagcttaccagattgtg
gttaagcaagatcgttatgctcaggttgatgtcgttaaaacggcggctaaagaagcattg
ctggctgaaaacccagatgccgatgcacgcgaaattgacggcctgcttggcagcctagag
aagaaagtggttcgtagccgcatcatcgcgggcaacccacgtatcgatggtcgtgagcca
gacatggttcgtgccctgagcgtgatggcgggcgtactgccacgtactcacggtagtgct
ctgttcacccgtggtgaaactcaggcgctggtgacttgtaccttaggtactgagcgtgac
gcacagaagatcgacagcatcatgggcgagcaaaccagccgcttcatgctgcactacaac
ttccctccatactcagtgggtgaaactggtatggttggctcgcctaagcgtcgtgaaatc
ggtcacggtaagctggcatggcgtggtatccacgcggtaatgcctaccgctgaagagttc
ccatacagcatccgcgtagtatctgagatcaccgaatctaacggttcaagctcaatggcg
tctgtgtgtggtacttcactggcgctgatggatgccggtgtaccaatcaagacttcagtt
gctggtatcgctatgggtctggttaaagaaggcgacgatttcgttgtactttctgacatc
ttgggtgacgaagaccacctaggtgacatggacttcaaagtggctggtacccgtgacggt
gttaccgcgctgcagatggatatcaagatcgaaggtattaccaaagagatcatgcagatc
gctctgcaacaagcctacggtgctcgcgtacacatcctgaatgtgatggaccaggctatc
tctggccaccgcgccgagatctcagatcacgcgccgcgtatcactacactgaagatcaac
ccagagaagatccgtgacgtgattggtaagggcggtgcgactatccgtgctctgaccgaa
gagactggcactactatcgagctggaagatgatggtaccgttaagattgcgtctgccaac
ggcgatgcgaccaaagaagctatccgtcgtatccaggagatcactgccgaagttgaagtg
ggcactgtctacaacggtaaggttgttcgtatcgttgacttcggtgccttcgtgactatc
ctgccgggtaaagatggtctggtacacatctcgcaaatcgccgaggagcgtgttgccaat
gtttctgactacctagaagtgggtcaggaagtgaaggttaaggtgatggaagtcgatcgc
caaggccgcgtacgtctgtcgatgaaagaagctcagccgaaggaagaagcggcaagcgaa
taa
DBGET
integrated database retrieval system
