Shewanella alkalitolerans: K0J45_16955
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Entry
K0J45_16955 CDS
T09228
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
shns
Shewanella alkalitolerans
Pathway
shns02020
Two-component system
shns02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0J45_16955
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0J45_16955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shns03021
]
K0J45_16955
Transcription machinery [BR:
shns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0J45_16955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QYJ97178
LinkDB
All DBs
Position
3915479..3916966
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AA seq
495 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQESASIEL
QDDSVSDSFDNKYDDKIELDSSQDNSGVETSDALTQDSMPDELPVDTTWDEVYTASPNSS
SGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQTCEDI
LEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIANARMLIK
EHLDLIAGRDFRLLMRKTKLKEDELRDAIALIQTLNPRPGLAITASRDEYVIPDVTVTKK
KGRWVVELNPDSMPKINVNQQYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNETLL
KVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKY
FFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKY
REAMLIPPSNQRKSL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcacttcagctcaaaatgggtcagcatctcaccatgacgccccagctacaa
caggccatacgtctgttgcagttgtcgtcattagagttgcagcaggagatccagcaggca
ttagaatccaacccgctactggagttggatgaagagcaggagagcgccagcatcgagctg
caagacgatagcgtcagcgacagcttcgacaacaagtacgacgacaagatagagctggat
tcgagccaggataattcaggggtcgagacctcagacgccctgactcaagactcaatgcca
gacgagctgccggtggataccacctgggatgaggtctacaccgcctcaccaaactcaagc
tcgggcgccatgcgcgacgacgacatgccttttcagggcgagaccagcgaaggtctatac
gaacacctggaatggcagaagaacctgacccctttttccgataacgacctggccatcgcc
accgccatcatcgacgccatcgacgagcgcggttacctgacccagacctgcgaagatatt
ctcgaggccatgggcgacccagagatcgaactcgacgaggtcgaggcggtactcaaacgg
gtacaacacttcgaccccattggtgtggcggcccgcgacctcagcgaatgtctgacgatc
cagctggcccagtacagcgacgatacaccgcacatagccaacgcccgcatgctgatcaaa
gaacacctggatctcatcgccggacgcgacttccgtctgctgatgcgcaagaccaagctc
aaggaagatgaactgagggatgccatcgccctgatccagaccctgaatccccgtccaggc
ctcgccatcaccgccagccgcgacgagtacgtgatcccggatgtgaccgtcaccaagaag
aagggacgctgggtagtcgagcttaacccagacagcatgcccaagatcaacgtcaaccag
cagtatgccgccatggcccgcagcactaagagtcaagcggatggccagtttattcgcggc
cacctgcaggaagccaaatggttcctcaagagccttgagagtcgcaacgagaccctgctc
aaggtgaccaactgtatcgtcgacttccagcaaggcttcttcgaatttggcgaagaggcg
atgaagcccatggtactgaacgacatcgccgaggcggtggagatgcatgaatccaccatc
tcacgtgtgaccacgcaaaaatatatgcataccccgagagggatcttcgagctcaaatac
ttcttctccagtcacgtcggtaccgacgatggcggagagtgctcttcaacagcaatacgt
gccttcattaagaagctggttgctgcggaaaaccagaaaaagccattgagcgacagcaag
atggctcaactcttggccgaacaggggattaaggtggctagacgcaccattgccaagtat
cgcgaggcaatgcttataccgccctcgaatcagcgcaagagcttataa
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