Shewanella alkalitolerans: K0J45_18490
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Entry
K0J45_18490 CDS
T09228
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
shns
Shewanella alkalitolerans
Brite
KEGG Orthology (KO) [BR:
shns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shns03021
]
K0J45_18490 (rpoH)
Transcription machinery [BR:
shns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0J45_18490 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Fe_dep_repress
2Fe-2S_thioredx
UCR_14kD
Tla3_C
GntR
Motif
Other DBs
NCBI-ProteinID:
QYJ97460
LinkDB
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Position
complement(4261196..4262053)
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AA seq
285 aa
AA seq
DB search
MTNQTQSMALMVPQSSSSLEAYIHSAHNIPMLEAKEEYELAKRLQETGDIQAAKQLIMSH
LRFVIHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNLRKAKKRLGWFSDEEVTMVAENLGVSKSDVTEMESRMAA
QDPAFDLASDNDDDQDYAPVHYLEDHSSDIASQVENDNFEADNQTRLLAAIKTLDERSQH
ILQARWLDEEKTTLQELAATYQVSAERIRQLEKNAMNKLKGRMEM
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcaaacgcaatcaatggcactaatggtacctcaaagcagcagtagcttagag
gcttatatccattctgcgcacaacattcctatgttggaggcgaaagaggagtatgagctg
gcgaaacgtctgcaggagaccggtgacattcaggctgcgaagcagttgattatgtctcat
cttcgtttcgttattcatgtcgccaaaggttacgcgggttatggtctgccacaggcggat
ctgatccaggaaggtaacattggtctgatgaaggcggtaaagcgctttgatcccgatgtg
ggtgtacgtcttgtctcgtttgccgtgcattggattaaagccgagatccacgaatacgtg
ctgaaaaactggcgtatcgttaaggtcgcgaccaccaaggcgcagcgtaaactgttcttc
aatctgcgtaaggctaagaaacgtcttggctggttcagcgatgaagaggtgaccatggtt
gccgaaaaccttggcgtctcgaagagcgatgtgactgagatggaatcacgcatggcggcg
caggatccagccttcgatctggccagcgacaacgatgacgatcaggactatgccccggtg
cattaccttgaggatcattcgtcggatatcgcctctcaggtcgaaaacgacaacttcgaa
gccgataaccaaacccgtcttctggcggccatcaagactcttgatgagcgtagccagcat
attctacaggcgcgttggttagacgaagagaagaccacgctgcaagagctggcggccact
tatcaagtttctgccgagcgtatcaggcagcttgagaagaacgcgatgaacaagctcaag
ggccgcatggaaatgtaa
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