Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_3307
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Entry
SHJGH_3307 CDS
T02531
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03030
DNA replication
sho03430
Mismatch repair
sho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHJGH_3307
03430 Mismatch repair
SHJGH_3307
03440 Homologous recombination
SHJGH_3307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sho03032
]
SHJGH_3307
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_3307
Enzymes [BR:
sho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHJGH_3307
DNA replication proteins [BR:
sho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHJGH_3307
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHJGH_3307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGF62972
LinkDB
All DBs
Position
complement(3809312..3812851)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKKA
GITPIIGIEAYVAPESRRNKRKILWGQPHQKRDDISGSGGYTHKTMWAVNKTGLHNLFRL
SSDAYAEGWLQKWPRMDKETIAQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAGAHDALLCI
QTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEMVDTTGMFEKRD
LMPKFDIPEGYTEVTWFQEEVRRGMERRFPGGVPEDRQKQAEYEMDVIIQMGFPGYFLVV
ADFIMWAKRQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRITKAMP
ADVLGKGIPLSGITDPSHPRYSEAGEVRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAG
VIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKA
NKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNGQQEITPIHPELEAPLKEVLDVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELEKNFVIFQAGARKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIRVLPPNVNES
EANFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDYLDKVDAVVCNKRTT
ESLIKAGAFDSMGHTRKGLMAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEETSDQPGFGL
DVEFTDDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGDYADGSVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGTNAPVVLTIPAVKVTPPMVSRLGEILSHHRGDSEVRI
KLQGPRKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgcccttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcgtgcaacgagatgggcatgacgcacatcgcc
atgtccgaccacggcaacctccacggggcgtacgacttcttccactccgcgaagaaggcc
gggatcaccccgatcatcgggatcgaggcgtacgtcgcccccgagtcccggcggaacaag
cgcaagatcctctggggccagccgcaccagaagcgggacgacatctccggttcgggtggt
tacacccacaagacgatgtgggccgtgaacaagaccggcctgcacaacctcttccggctc
tcctccgacgcctacgccgagggctggctccagaagtggccccggatggacaaggagacc
atcgcccagtggtccgagggcatcgtcgcctccaccggctgcccctccggcgaggtgcag
acccggctgcgcctcggccacttcgacgaggccctcaaggccgccgccgactaccaggac
atcttcggcaaggacaggtacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacggcctgctggagatcggcaagaagctcggcatcccgccgctggtcacc
aacgactcgcactacacgtacgcgcacgaggcgggcgcccacgacgccctgctgtgcatc
cagaccggcaagaacctctccgaccccgaccgcttcaagttcgacggcaccggctactac
ctgaagtccacggacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
gccaacacgctcctcgtcgccgagatggtggacaccaccggcatgttcgagaagcgcgac
ctcatgcccaagttcgacatccccgagggctacaccgaggtcacctggttccaggaggag
gtccgccgcggcatggagcgccgcttcccgggcggcgtccccgaggaccgccagaagcag
gccgagtacgagatggacgtcatcatccagatggggttcccgggctacttcctcgtggtc
gccgacttcatcatgtgggccaagcgccagggcatcgcggtcgggcccggccgaggctcc
gcggccggctcgatcgtcgcctacgcgctcggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcatctcgatgcccgatgtcgacatc
gacttcgacgagcgccggcgcgtcgaggtgatccggtacgtgacggagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaccatcaaggccaagaacgcgatcaaggac
tccgcgcgcgtgctgggctacccgtacgcgatgggcgaccgcatcaccaaggccatgccc
gccgacgtcctcggcaagggcatcccgctgtccggcatcaccgaccccagccacccccgc
tactcggaggccggcgaggtccgggggatgtacgagaacgagccggacgtgaagaaggtc
atcgacaccgcgcgcggtgtggagggcctggtccggcagatgggcgtgcacgccgccggt
gtgatcatgtccagcgagaccatcaccgagcacgtcccggtctgggtgaggcacaccgac
ggcgtgaccatcacccagtgggactacccgagctgtgagtcgctcggcctgctgaagatg
gacttcctgggcctgcgcaacctcacgatcatggacgacgccgtcaagatggtgaaggcc
aacaaggggatcgacatcgacctcctgagcctcccgctcgacgaccccacgaccttcgaa
ctgctccagcgcggcgacaccctcggcgtcttccagttcgacggcggccccatgcggtcc
ctgctgcggctgatgaagccggacaacttcgaagacatctccgccgtgtcggccctgtac
cggccgggcccgatgggcatgaactcccacacgaactacgcgctgcgcaagaacgggcag
caggagatcacgccgatccaccccgagctggaggcgccgctcaaggaggtcctggacgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgcgggc
tactcgctcggcgaggcggacatcctccgccgcgtgatgggcaagaagaagccggaggag
ctggagaagaacttcgtcatcttccaggccggcgcccgcaagaacggctacagcgacgag
gccatccaggcgctctgggacgtgctggtccccttcgccggctacgcgttcaacaaggcg
cactccgccgcgtacggcctggtgtcgtactggacggcgtacctgaaggcgaaccacccc
gccgagtacatggccgccctgctcacctcggtcaaggacgacaaggacaagtccgcggtc
tacctcaacgaatgccgccgcatgggcatccgggtgctcccgccgaacgtcaacgagtcc
gaggccaacttcgccgcccagggcgacgacgtgatcctcttcggcctgtccgccgtccgc
aacgtcggcaccaacgtcgtcgagtcgatcatcaagtgccgcaaggcgaaggggaagtac
gcctccttccccgactacctcgacaaggtcgacgcggtggtctgcaacaagcgcaccacc
gaatcgctgatcaaggccggcgccttcgactcgatgggccacacccgcaagggcctcatg
gcccagtacgagccgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcgggatgggcgaggagaccagcgaccagcccggcttcggcctc
gacgtggagttcaccgacgacgagtgggacaagacctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctcttcggcctggagcacgtgctctccgac
aaggcggacgcgggcatcgcccagctcaccggcggtgactacgcggacggctcggtggtg
accatcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgg
gccatcgccaccgtcgaggacctggcgggctccatcgagtgcatgttcttcccggccacc
taccagctggtgtccacccaactcgtcgaggacgccgtggtgttcgtcaagggccgcctc
gacaagcgcgaggacgtgccccggctcgtcgccatggagctgatggtcccggacctgtcc
aacgcgggcaccaacgcgcccgtggtgctcaccatcccggccgtgaaggtgaccccgccg
atggtcagccgcctcggcgagatcctcagccaccacaggggcgacagcgaggtccggatc
aagctccagggcccgcgcaagaccaccgtgctccgcctggaccggcaccgggtcaagccc
gacccggcgctgttcggcgacctgaaggtgctgctcggcccgtcctgcctggccggctga
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