Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_4767
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Entry
SHJGH_4767 CDS
T02531
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sho03019
]
SHJGH_4767
Enzymes [BR:
sho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SHJGH_4767
Messenger RNA biogenesis [BR:
sho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SHJGH_4767
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
SLFN-g3_helicase
T2SSE
nSTAND_NTPase5
NACHT
AAA_16
ResIII
PhoH
AAA_30
MetJ
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AGF64430
LinkDB
All DBs
Position
5434721..5438665
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTHPAPALGTLAPRLTELSLRDAHRLGRRLEGARKIRKPEARATVLAEIDGEIGKAEAR
MAERRSRVPAVTYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELRTPLGESVGWKVRFTDQVNPDATFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIIEVSGRTYPVEVRYRPLLEEESDDADRDQITAICDAVEELQAEGPGDILVFLS
GEREIRDTADALEKKKYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFL
TRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDPRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPAEKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQRERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLNEDDAPADRVHVSLLAGLLSHVGMKDVKDGNKNEYLGARNAKFAIF
PGSALFRKQPKFVMSAELVETSRLWARVNAKIEPEWVEPLAGHLLKRTYSEPHWEKDQAA
VMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFFADNRKLLSE
VEELEHRARRRDIVVDDDTLFDFYDQRVPEHVVSGAHFDSWWKRKRHEQPDFLDFEREML
IRESAEAVTKADYPDTWRQGQLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQI
PGLREEVVTELIRSLPKPIRRNYVPAPNYAKAFLEKAVPLQEPLTVSMARELKRMVGVPF
EAEDFDWAKVPDHLKITFRIVDERRRKLAEDKDLETLKLQLKPKARKALSQAAAATASRE
GGESLERKGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAEAMW
KGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSIQALFDDCAMAAADKLIGDFGG
PAWDEESYRKLYDRVRAEIVDTTVRTVAQVQQVLAAWQACERRLKAVGSPALLANLTDVR
KQLDALVKPGFVTWAGIRRLPDLMRYLVAADRRLQQMPTNVQRDTTRMEKVHEMQDEYAW
LLEQLPKGRPVPSAVLEIRWMLEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcccgcccccgccctcggcaccctcgcaccccgtctgaccgagctgtcg
ctgcgcgacgcgcaccggctcgggcggcggctggagggcgcacgcaagatccgtaagccg
gaggcccgtgccaccgtcctcgccgagatcgacggcgagatcggcaaggccgaggcccgg
atggccgagcggcgctcgcgcgtgccggccgtcacctaccccgaacagctgccggtcagc
cagaagaaggacgagatcgcggccgccatccgcgatcaccaggtcgtcatcgtggccggt
gagaccggttccgggaagaccacccagatcccgaagatctgcctggagctgggccggggc
gtgcgcggcatgatcgggcacacccagccccgcaggatcgccgcccggaccgtcgccgag
cgggtcgcggaggagctgaggacgcccctcggcgagtccgtcggctggaaggtgcggttc
accgaccaggtgaacccggacgccaccttcatcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctacctcgcccagctgctgccgaag
cggcccgacctgaaggtcgtcatcacctcggcgaccatcgacccggagcgcttctcccgg
cacttcggcgacgccccgatcatcgaggtcagcgggcggacgtatcccgtcgaggtgcgc
taccggccgctcctcgaagaggaatcggacgacgccgaccgcgaccagatcaccgccatc
tgcgacgccgtggaggaactccaggccgaggggccgggcgacatcctcgtcttcctctcc
ggcgagcgggagatccgggacaccgcggacgcgctggagaagaagaagtaccgcttcacc
gaggtgctccccctctacgcccggctctcgcacgccgagcagcaccgggtcttccagccg
cacaccgggcgcaggatcgtgctggccaccaacgtcgccgagacgtccctgaccgtgccg
ggcatcaagtacgtcatcgaccccggcttcgcccggatcagccgctacagccaccgcacc
aaggtccagcggctgcccatcgagccggtcagccaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtccgacggcatctgcatccgcctgtactccgaggacgacttcctc
acccgcccggagttcacggacgcggagatcctgcggacgaacctggcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctccaggagctgggcgcgctggacccggcc
cagaaggacccccgcaagcggctcacggacaccggccggaagctggcgcagctccccgtc
gacccccgcctggcccggatggtcctggaggccgacaagaacggctgcgtccgcgaggtc
atggtcatcgccgccgcgctgtccatccaggacccgcgcgagcgcccggccgagaagcag
gcccaggccgaccagcagcacgcccgcttcaaggacgagaccagcgacttcctcgcctat
ctgaacctgtggcggtacgtccgcgagcagcagcgcgagcgcggctcgtcgtccttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcattcgcgaatggcaggacatctac
acccagctgcgcacggtcgccaagcagatgggcatccacctcaacgaggacgacgccccc
gccgaccgcgtccatgtctccctcctcgccggcctcctctcccacgtcgggatgaaggac
gtgaaggacggcaacaagaacgagtacctgggcgcccgcaacgccaagttcgcgatcttc
ccgggctcggcgctgttcaggaagcagccgaagttcgtgatgtcggccgagctggtggag
acgagccgcctctgggcgcgggtcaacgccaagatcgagccggaatgggtcgaaccgctc
gccgggcacctgctcaagcggacgtacagcgaaccgcactgggagaaggaccaggcggcc
gtgatggcgtacgagaaggtcacgctgtacggcgtcccgatcgtcgcccagcggaaggtg
aactacggccggatcgacccggaggtctcccgcgagctgttcatccgcaacgcgctcgtg
gagggcgactggcgcacgcaccacaagttcttcgccgacaaccgcaagctgctcagcgag
gtcgaggagctggagcaccgcgcccggcgccgggacatcgtggtcgacgacgacacgctc
ttcgacttctacgaccagcgggtgcccgaacacgtcgtctccggcgcccacttcgactcc
tggtggaagcggaagcggcacgagcagccggacttcctggacttcgagcgggagatgctc
atccgggagtccgcggaggcggtcaccaaggccgactatcccgacacctggcggcagggg
cagctcaagttccgggtgacgtatcagttcgagccgggtgcggacgccgacggtgtgacg
gtccacatcccgctccaggtcctcaaccaggtcaccgacgagggcttcgactggcagatc
ccgggcctgcgcgaggaggtggtgacggagctgatccgctccctgccgaagccgatccgc
cgcaactacgtaccggcgccgaactacgcgaaggcgttcctggagaaggcggtgccgctc
caggagccgctgaccgtctcgatggcgcgcgagctgaagcggatggtcggcgttccgttc
gaggcggaggacttcgactgggccaaggtccccgaccacctcaagatcacgttccggatc
gtcgacgagcggcgccggaagctggccgaggacaaggacctggagacgctgaagctccag
ctcaagccgaaggcacgcaaggccctgtcgcaggccgcggcggcgaccgcctcccgcgag
ggcggggagtcgctggagcgcaagggcctgacggactggacgatcggcaccctcacccgc
gtcttcgagacacgccgggctggccagccggtcaaggcgtacccggcgctggtggacgac
ggcgacacggtctccgtccgcctcttcgacacggaggcggagcaggcggaggccatgtgg
aagggcacccgccgtctcatcctgcgcaacatcccggtgaatccggcgaagttcgcgtcc
gagaagctgacgaacgcccagaaactcgctctctcggccaacccccacggatcgatccag
gccctgttcgacgactgcgcgatggccgcggcggacaagctgatcggggacttcgggggg
ccggcgtgggacgaggagtcgtaccggaagctgtacgacagggtgcgcgcggagatcgtg
gacaccacggtccgcacggtcgcccaggtgcagcaggtcctcgccgcctggcaggcctgt
gagcgccgcctgaaggccgtcggcagccccgcgctgctcgcgaacctgacggacgtccgc
aagcagctggacgcccttgtgaagcccggtttcgtcacctgggcgggcatacggcgcctg
ccggacctgatgcgctacctggtggccgcggaccggcgcctccagcagatgccgacgaac
gtccagcgggacacgacccgcatggagaaggtccacgagatgcaggacgagtacgcctgg
ctcctggaacagctccccaagggccgcccggtgccgtccgccgtcctggagatccgctgg
atgctggaggagctgcgggtgagctacttcgcccacgcgctgggcacggcgtaccccgtc
tccgacaagcggatcgtcaaggcgatcgacgcggccgccccgtaa
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