Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_5384
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Entry
SHJGH_5384 CDS
T02531
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sho03016
]
SHJGH_5384
Enzymes [BR:
sho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SHJGH_5384
Transfer RNA biogenesis [BR:
sho03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SHJGH_5384
Prokaryotic type
tRNA splicing ligases
SHJGH_5384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGF65047
LinkDB
All DBs
Position
6120773..6121966
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPATVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEQVIPVGRGMHQDPVEPG
DFHGLATAGWEDFWGRFEGVAEAVKFRHDRAEKQMGTLGSGNHYLEVCLDQSDSVWLTLH
SGSRNIGKELAEHHIGVAQKLPHNQDLVDRDLAVFVSDTPQMAAYRHDLFWAQEYAKYNR
TLMMALLKDVIRKEFKKAKPTFEPEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEFGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTTKDLEEQTRGVECRKDSG
VLDEIPGAYKNIDQVMEQQRDLVEVVAKLKQFICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgccaaggtcccgatccggatgtggacggacccggcg
acggtcgaggacgtggccctgcgccagctccagaacgtggcgaccctgccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggcaagggcgccacggtcggctcggtcatc
gcgatgcggggcgcggtgtgcccggcggcggtcggggtggacatcggctgcgggatgtcg
gcggtgcggacgtccctgacggcgaacgacctccccggtgacctgtcgcgactgcgatcg
aggatcgagcaggtgattccggtgggccgggggatgcaccaggatcccgtggagccgggg
gacttccacgggctggccaccgcggggtgggaggacttctgggggcggttcgagggggtg
gcggaggcggtcaaatttcgtcacgatcgagcagaaaagcagatgggaacgctcggatcc
ggaaaccactacctcgaagtttgtcttgatcagtcagattcggtctggctcacgctccac
tcagggtcgcgcaacatcggcaaggaactcgccgagcaccacatcggcgtggcccagaag
cttccgcacaaccaggacctggtcgaccgcgacctcgccgtcttcgtgtcggacaccccg
cagatggccgcctaccgccatgacctgttttgggcgcaggagtacgccaagtacaaccgc
acgctcatgatggcgctcctgaaggatgtgatccgcaaggagttcaagaaggcgaagccg
accttcgagccggagatctcgtgccaccacaactacgtggcggaggagcggtacgaggga
atggacctgctcgtgacccgtaagggagcgatccgcgccggatccggtgagttcgggatc
attcccggttcgatgggcaccagctcgtacatcgtgaagggcctcgggaacgagaaggcc
ttcaactcggcttcgcacggggccggtcgacgtatgagccgtaacgcggccaagcgccgc
ttcacgacgaaggacttggaggagcagacccggggtgtggagtgccgcaaggactcgggg
gtgctggacgagattccgggtgcttacaagaacatcgaccaggtgatggagcagcagcgc
gacctcgttgaggtcgtggcgaagctgaagcagttcatctgcgtgaagggttga
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