Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_6052
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Entry
SHJGH_6052 CDS
T02531
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03420
Nucleotide excision repair
sho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHJGH_6052
03430 Mismatch repair
SHJGH_6052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_6052
Enzymes [BR:
sho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHJGH_6052
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHJGH_6052
MMR (mismatch excision repair)
Other MMR factors
SHJGH_6052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Sulf_transp
Motif
Other DBs
NCBI-ProteinID:
AGF65715
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All DBs
Position
6856061..6859597
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AA seq
1178 aa
AA seq
DB search
MPARITDPEQLKELLGIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAGELAERVRKALIKAGVTDPDVIAPDNPPGEPVISTYHSFAGRLL
TDHGLRLGLEPSSRLLADATRYQLAARVLREAPGPYPALTRSFADLVSDLLALDSELAEH
LVDPEELRAWDTGLLRTLEGAKLTNADLRKVPETAAARRELAELVQRYRAAKRARDLLDF
GDQIALSARLARIPEVGRLLREEFRVVLLDEYQDTSVAQRVLLAGLFGGGTGHPVTAVGD
PCQAIYGWRGASVANLDDFPDHFAHADGRPATRQALSENRRSGGRLLDLANGLAAPLRAL
HAGVEALRPAPGAEYDGTVRCALLPTHAEEIDWIADSLAHLVRTGTPPGEIAVLCRTATD
FAEIQGALVARDIPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANAALVRLLTGPRWRIG
PRDLALLGRRARLLVAHARVDGTDDPDRRLAKAVEGVDPSEVISLADALDTFLEAPTEEG
DDDGLPFSPDARVRFARLAAELRDLRRSLSDPLMDVLHRVLAVTGLEVELSASPHALAAR
RRETLSNFLDIAASFAASDSEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKS
KGLEWDVVAVPGLVTGTFPSAQGREKWTAQAKVLPHALRGDTDTLPDVHSWDSRGMKAFH
EAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLTALYDHCAAGYGE
IEVWADPPAEDEENPALHAATADQVWPLPLDDAALARRRAAAETVFAHLDALAAEPADGR
RPALHDPAGAEDPDWPAPPDDEPYDAEPYGEGPYDEEPYADPPQEEDLPHDDPFGDDPLY
AEPLDDDPFDQDAWGAERPTVPHQAPAPQDGPRAAEPRLAAALTPEEARTIASWDRDLDA
LTGELLRARQTVTEVPLPTTLTATQLLRLAEDPDGLAQELARPMPRPPQPAARRGTRFHA
WVETRFEELTLPLLEPDELPGGDAEIADERDLEALKDAFERTEYARRTPYRVEAPFQLTL
AGRVVRGRIDAVYRHGDGDGATYEIVDWKTGRTGTADPLQLAVYRLAWAEQQGIPPESVT
ATFLYVRSGEVVRPQGLPDRAALERLLTGETEGTPKAS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcccgtatcaccgaccccgagcagctcaaggagctcctcggcatcccgttcacc
ccggagcagacggcctgcatcatcgcgccgcccgccccgcaggtgatcgtggccggtgcc
gggtcgggcaagaccaccgtgatggcggcccgcgtggtctggctggtcggcaccgggcag
gtggcccccgaacaggtcctcggcctgaccttcaccaacaaggccgccggtgagctggcc
gaacgcgtccgcaaggccctgatcaaggccggcgtcaccgaccccgatgtcatcgccccc
gacaaccctccgggcgagccggtcatctcgacgtaccactccttcgccggtcgcctgctc
accgaccacggcctgcggctcggcctggagcccagctcgcgcctcctggccgacgccacc
cgctaccagctcgccgcgcgcgtgctgcgcgaggccccgggcccgtacccggcactgacc
cgctccttcgccgacctcgtcagcgacctgctcgcgctcgactccgaactcgccgaacac
ctcgtcgaccccgaggaactgcgcgcctgggacacgggcctgctgcgcaccctggaaggg
gccaagctcaccaacgccgacctgcgcaaggtcccggagaccgccgcggcccgccgggag
ctcgccgagctcgtccagcgctaccgggccgccaagcgcgcgcgggacctgctcgacttc
ggcgaccagatcgccctgtcggcccgcctcgcccgcatccccgaggtgggccgcctgctg
cgcgaggagttccgcgtggtgctcctggacgagtaccaggacacctccgtggcccagcgc
gtcctgctcgccggcctgttcggcggcggcaccggtcacccggtgaccgccgtcggcgac
ccctgccaggccatctacggctggcgcggcgcctccgtcgccaacctggacgacttcccc
gaccacttcgcgcacgccgacggcaggcccgccacccggcaggcgctcagcgagaaccgc
cgcagcggcgggcgcctgctcgacctcgccaacggcctcgccgcccccctgcgcgccctg
cacgcgggcgtggaggccctccgcccggccccgggcgccgagtacgacggcacggtccgc
tgcgccctgctgcccacccacgccgaggagatcgactggatcgccgactccctcgcccac
ctcgtgcgcaccggcaccccgcccggcgagatcgccgtactgtgccggaccgcgaccgac
ttcgccgagatccagggcgccctcgtcgcccgcgacatccccgtcgaggtcgtcggcctc
tccggcctgctccacctgcccgagatcgccgacctcgtcgccgtctgcgaggtcctccag
gaccccggcgccaacgccgccctggtgcgcctgctgaccggaccgcgctggcgcatcggc
ccccgcgacctcgccctgctgggccgccgcgcccggctgctggtcgcccacgcgcgcgtg
gacggcaccgacgacccggaccgccggctcgcgaaggccgtggaaggcgtcgacccgtcc
gaggtgatctcgctcgcggacgccctggacaccttcctggaagcgcccacggaggagggc
gacgacgacgggctgccgttctccccggacgcgcgcgtgcgcttcgcccggctcgccgcc
gagctgcgcgacctgcgccgctcgctgtccgacccgctgatggacgtcctgcaccgcgtc
ctcgccgtcaccggcctggaggtggagctgtcggcgtccccacacgcgctcgccgcccgc
cgccgcgagaccctgtccaacttcctggacatcgccgcctccttcgccgcgagcgacagc
gaggccaccctgctggccttcctcggcttcctgcgcaccgccgcccagtacgagaagggc
ctcgacaacgccctgcccggcggcgagaacaccgtcaaggtgctcaccgcgcacaagtcc
aagggcctggagtgggacgtcgtggccgtccccggactcgtgaccggcacgttccccagc
gcccagggccgcgagaagtggaccgcgcaggccaaggtgctgccgcacgccctgcgtggc
gacaccgacaccctgcccgacgtgcactcctgggactcgcgcggcatgaaggccttccac
gaggccatgaaggagcaccagcacaccgaggagctccgactcggctacgtcaccttcacc
cggccgcgctcactcctgctcggctccggccactggtgggggcccagccagaagaagccg
cgcggcccgtcggacttcctcacggccctgtacgaccactgcgccgccgggtacggcgag
atcgaggtgtgggcggacccgcccgccgaggacgaggagaacccggccctgcacgcggcc
accgccgaccaggtgtggccgctcccgctggacgacgccgccctggcccgtcgccgcgcc
gccgcggagaccgtcttcgcccacctggacgccctcgccgccgagcctgccgacgggcgc
cggccggccctgcacgaccccgccggcgccgaggacccggactggcccgccccaccggac
gacgagccgtatgacgccgagccgtacggcgaggggccgtacgacgaggagccgtacgcg
gacccgccccaggaagaggatcttccgcacgacgatccgttcggcgacgatcccctgtac
gccgaacccctcgacgacgacccgttcgaccaggacgcctggggtgccgaacggcccacg
gtcccgcaccaggcgcccgccccgcaggacggcccccgtgccgccgaaccgcggctcgcc
gccgccctcaccccggaggaggcccgcaccatcgcctcctgggaccgtgacctggacgcg
ctcaccggagagctgctgcgcgcccggcagaccgtcaccgaggtccccctgcccaccacg
ctcaccgccacccagctgctgcggctcgccgaggacccggacgggctcgcacaggaactg
gcgcgccccatgccgcgccccccgcaaccagccgcacgccggggcacccggttccacgcc
tgggtggagacccgcttcgaggagctgaccctgcccctgctggaaccggacgagctgccc
ggcggcgacgccgagatcgccgacgaacgcgacctggaagccctcaaggacgccttcgaa
cgcaccgagtacgcccggcgcaccccgtaccgggtcgaggcccccttccagctcaccctc
gccggccgtgtcgtccggggccgcatcgacgccgtctaccggcacggcgacggcgacggg
gcgacgtacgagatcgtcgactggaagaccggccgcaccggcaccgccgacccgctccag
ctcgccgtgtaccggctggcctgggccgagcagcagggcataccgcccgagtccgtcacc
gccacgttcctgtacgtacgcagcggcgaggtcgtacgcccccagggcctgccggaccgg
gccgcgctggagcggctgctcacgggtgagacggagggcacacccaaggcgagctga
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