Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_6178
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Entry
SHJGH_6178 CDS
T02531
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SHJGH_6178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_6178
Enzymes [BR:
sho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SHJGH_6178
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SHJGH_6178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AGF65841
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All DBs
Position
complement(6994193..6995062)
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AA seq
289 aa
AA seq
DB search
MEGRRVALSNLEKVLYPETGFTKGELLHYYATTATALLPHLRDRAVSFLRYPDGPEGQLF
FTKNVPPGTPEWVTTAEVPRSSADSPARMVVVQDLPSLVWAANLVTEFHTHQWLVRSPQE
ADRLVFDLDPGAPATVVHCCEVALWLRERLAADGIVAYPKTAGSKGLHLLAAVRGSSSEG
TSDYAKALAVEAERAMPRLVVHRMTKSLRPGKVFVDWSQNAARKTTATPYTVRARRLPLV
SAPVTWEEVADCRSPGQLEIHAEDMAPRLQDHGDLMEPLLDRRSAAPLP
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtggaggggcgccgggtcgcgctcagcaacctggagaaggtgctgtatccggagaccggc
ttcaccaaaggggagctgctgcactactacgcgaccaccgccacggccctgctgccgcac
ctgcgcgaccgggcggtgtccttcctgcgctatccggacgggcccgaagggcagctcttc
ttcacgaagaacgtgccgccgggtacgcccgagtgggtcaccacggccgaggtgccgcgg
tcgtcggcggacagcccggcccggatggtcgtggtgcaggacctgccgagcctggtctgg
gcggcgaacctcgtcaccgagttccacacccaccagtggctggtgcggtccccgcaggag
gcggaccggctggtcttcgacctcgatccgggcgcgcccgcgacggtcgtgcactgctgc
gaggtcgccctgtggctgcgggagcggctcgcggcggacgggatcgtggcgtacccgaag
accgcggggtcgaaggggctgcatctgctggcggcggtgcgcgggagttcttccgagggg
acgtccgattacgcgaaggcgctggcggtggaggccgagcgggcgatgccccggctggtg
gtgcaccggatgacgaagagcctgcggccggggaaggtgttcgtcgactggagccagaac
gctgcgcgcaagaccacggccaccccgtacaccgtgcgcgcccgccgcctccccctggtg
tccgcgccggtgacctgggaggaggtggccgactgccggagccccgggcagctggagatc
cacgcggaggacatggcgccgcgcttgcaggatcacggggacctgatggagccgttgctg
gaccggcggtcggcggccccgttgccgtaa
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