Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_6450
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Entry
SHJGH_6450 CDS
T02531
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHJGH_6450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_6450
Enzymes [BR:
sho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SHJGH_6450
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SHJGH_6450
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SHJGH_6450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7573
Auto_anti-p27
NFACT_N
DZR
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AGF66113
LinkDB
All DBs
Position
7303903..7304763
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AA seq
286 aa
AA seq
DB search
MPELPEVEVVRRGLERWVAHRTVAETEVLHPRAVRRHVAGADDFAHRLKGHHIGTPRRRG
KYLWLPLEETNQSVLAHLGMSGQLLVQPHETADEKHLRIRVRFADSLGTELRFVDQRTFG
GLSLHDNTPDGLPDVIAHIARDPLDPLFDDEAFHQALRRKRTTIKRALLDQSLISGVGNI
YADEALWRARIHYERPTANFTRPVTAELLGHIRDVMNAALAVGGTSFDSLYVNVNGESGY
FDRSLDAYGREGEPCRRCGTPMRRRPWMNRSSYFCPTCQRAPRVSS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagttgcccgaggtcgaagtcgtccgccggggcctggagcgctgggtcgcccac
cggaccgtcgccgagaccgaggtgctgcacccgcgagccgtacgccggcacgtcgccggg
gccgacgacttcgcgcaccggctcaagggccaccacatcggcacgccccggcggcgcggc
aagtacctgtggctgccgctggaggagacgaaccagtccgtcctcgcccacctcggcatg
agcggacagctactggtccagccgcacgagacggcggacgagaagcacctgcgcatccgc
gtgcggttcgccgactccctaggcaccgaactccgcttcgtcgaccagcgcaccttcggc
gggctgtcgttgcacgacaacacccccgacggcctgcccgacgtcatcgcgcacatcgcc
cgcgacccgctggacccgctcttcgacgacgaggccttccaccaggcgctgcgccgcaag
cggaccaccatcaagcgggccctgctggaccagtcgctgatcagcggcgtcggcaacatc
tacgcggacgaggccctgtggcgcgcccgcatccactacgaacgccccacggcgaacttc
acccgcccggtcacggcggaactcctcggtcacatccgggacgtgatgaacgcggccctc
gccgtcggcggcaccagcttcgacagcctgtacgtcaacgtcaacggcgaatccggctac
ttcgaccgttccctggacgcctacggccgggagggcgagccctgccgccgctgcggcacc
cccatgcgccggcgcccctggatgaaccggtccagctacttctgccccacgtgtcagagg
gcgccgcgcgtctcgtcgtaa
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