Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_6853
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Entry
SHJGH_6853 CDS
T02531
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sho03016
]
SHJGH_6853
Enzymes [BR:
sho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SHJGH_6853
Transfer RNA biogenesis [BR:
sho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SHJGH_6853
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AGF66515
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Position
complement(7795681..7796835)
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AA seq
384 aa
AA seq
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MIADEAALDRVIAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVACPD
LSGLGEALSGVEWVLHAATQDLPCLREIGMVPSRLFDTELAGRLAGFPRVGLGAMVEGVL
GFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWALEEFDAI
ASAPPAEPRKDPWRRTSGMHKVRRRRQLAVVRELWQTRDRIAQRRDVSPGKVLSDTAIVE
AALALPGNVHVLAGLNGFGHRMGRRQLEQWQAAVDRAKALPDSALPQPGQPVTGPPPPRA
WADKDPAAAARLSAARAGVTALAERLTMPQENVISPDTVRRICWEPPASVDEESVGAALA
GYGARPWQIELVTPVLVDALSARA
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgccgacgaggcggccctcgaccgggtgatcgccgccttcgccgccggcaccggc
ccggtcgccgtggacgccgagcgcgcctccggttaccgctacgggcagcgcgcctacctg
gtgcagctgcgccgcgagggcgccgggaccgcgctgatcgaccccgtcgcctgccccgac
ctgtccggcctcggcgaggccctgtccggcgtggagtgggtgctgcacgcggccacccag
gacctgccgtgcctgcgcgagataggcatggtcccgagccggctgttcgacaccgaactg
gccggccggctcgcgggcttcccccgggtcggtctcggcgccatggtggagggcgtcctc
ggcttcgtcctggagaagggccactccgccgtcgactggtcgacccgcccgctgcccgag
ccctggctgcggtacgcggcgctcgacgtcgaactgctcgtcgacctgcgggacgccctg
gagaaggagctggaccggcagggcaagctggagtgggcccttgaggagttcgacgcgatc
gcgtcggcgccgccggccgagccgcgcaaggacccctggcgccgcacctccgggatgcac
aaggtgcgccggcgccggcagctcgcggtcgtgcgcgagctctggcagacgcgggaccgg
atcgcgcagcggcgggacgtgtcgccggggaaggtgctgagcgacacggccatcgtggag
gcggcgctggccctgccgggcaatgtgcacgtcctcgccggactgaacgggttcgggcac
cggatggggcggcggcagcttgagcagtggcaggccgcggtggaccgggccaaggccctt
cccgacagtgcgctgccgcagccggggcagccggtgacggggcctccgccgccgcgtgcc
tgggccgacaaggatccggccgccgcggcccggctgtccgccgcccgcgcgggggtgacc
gcgctggccgagcggctcaccatgcctcaggagaacgtgatctccccggacacggtgcgg
cggatctgctgggagccgccggcgtccgtcgacgaggagtccgtgggtgccgcgctggcc
gggtacggcgcgcggccctggcagatcgagctggtcacgccggtgctggtcgacgcgctg
tcggcgcgggcctga
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