Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_7100
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Entry
SHJGH_7100 CDS
T02531
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHJGH_7100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sho03019
]
SHJGH_7100
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_7100
Enzymes [BR:
sho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHJGH_7100
Messenger RNA biogenesis [BR:
sho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHJGH_7100
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SHJGH_7100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
MarR_2
DUF3553
PcrA_UvrD_tudor
Cas3-like_C_2
GntR
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AGF66762
LinkDB
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Position
8066866..8068590
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AA seq
574 aa
AA seq
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MVRKAGRETEGRVRAGRLRRTAADVFGWEHLLPEQLTAMEWVLGGHDTLVVMPTGSGKSA
VYQVPALLLPGPVVVVSPLLALQRDQIAGLPEGDDAPGAVAVNSDLGAAETEAAWEDVRS
GRARLVYLAPEQLARDDVVEALAGVGPALFVVDEAQCVSSWGHDFRPDYLRLEQAAHRVG
RPPVLALTATAAPPVRREITERLGMRRPRLMVTGFDRPNIRLEVRRFLDEDERRQAVIER
AAAEPKPGIVYAATRKDSERYAGELASLGLAAEAYHAGLRAGERARVHRAFLAGETDVVV
ATSAFGMGIDKEDVRYVLHTSLPGSLDAYYQEIGRCGRDGQPALAVLHYRERDTGMQTYF
AGRTPGRTVLSRVAEAVHRHREDPAGLEELREETGLSRNRVTAAVNLLQEAGAVAAAEDG
AVRPAEGVSPGRAVERAQRAGEAHRRTDRSRVDMARAYAETTGCRRHFLLGYFGEAYEAP
CGNCDTCEEGAAGRADRGASGDQRSAHPCAAAFPTGTEVRHEKWGEGTVLSEEPDRITVL
FDRAGYHTLSLEAVADHDDLLTVLRRPGEEQQDT
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggaaggcggggcgggaaacggaaggccgggtccgggccgggcgtctgcgccgt
acggcggcggacgtcttcggctgggagcacctcctgccggagcagctcacggccatggag
tgggtgctgggcggccacgacaccctggtcgtcatgccgacgggctccggcaagtcggcc
gtctaccaggtgccggcgctgctgctgcccggcccggtcgtcgtggtgtcaccgctgctc
gcgctccagcgggaccagatcgcgggtctccccgagggcgacgacgccccgggggccgtc
gcggtcaactcggacctgggcgcggcggagaccgaggcggcctgggaggacgtacggtcg
ggccgggcccgtctcgtgtacctggccccggaacagctcgcccgggacgacgtggtggag
gcgctggccggggtgggtccggccctgttcgtggtggacgaggcccagtgcgtgtcctcg
tggggccacgacttccgccccgactacctgcgtctggagcaggccgcgcaccgtgtgggc
agaccgcccgtgctggctctgaccgcgaccgccgccccgcccgtgcgccgggagatcacc
gagcgtctggggatgcgccgcccccggctgatggtcaccgggttcgaccgcccgaacatc
cggctggaggtccgccgcttcctcgacgaggacgagcgccggcaggccgtgatcgagcgg
gccgccgccgaacccaagcccggcatcgtctacgcggcgacccggaaggacagcgagcgg
tacgcgggcgaactcgcctctctggggctggccgccgaggcctaccacgccggactgcgc
gccggcgaacgcgcccgcgtccaccgcgccttcctggccggcgagaccgacgtcgtcgtg
gccacctcggcgttcggcatgggcatcgacaaggaggacgtacggtacgtcctgcacacc
tcgctgcccggctccctggacgcctactaccaggagatcggccgctgcggcagggacggg
cagcccgcgctcgcggtgctgcactaccgggagcgggacaccgggatgcagacgtacttc
gcgggccggacccccggccgcacggtcctgtcgcgggtggccgaagccgtccaccggcac
cgcgaggaccccgccggcctggaggaactgcgcgaggagacgggactgtcccggaaccgg
gtcaccgccgcggtcaacctcctccaggaggccggagccgtcgccgcggcggaggacggc
gcggtgcgcccggccgagggcgtgtcaccgggccgggcggtggagcgggcgcagcgggcg
ggcgaggcccaccgccgtacggaccgctcgcgcgtggacatggcccgggcctacgccgag
acgaccggctgccgacggcacttcctcctcggctatttcggcgaggcgtacgaggccccg
tgcgggaactgcgacacctgcgaggaaggggccgccggccgggccgaccgcggcgcgagc
ggcgaccagcggtccgcgcacccctgtgccgccgcgttcccgaccgggaccgaggtacgg
cacgagaagtggggcgagggcacggtgctcagcgaggaaccggaccgcatcaccgtgctg
ttcgaccgggccggctaccacacgctctccctggaagccgtggcggaccacgacgacctg
ctcaccgtcctgcgccgccccggcgaggagcagcaggacacctga
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