Segatella hominis: KUA50_014320
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Entry
KUA50_014320 CDS
T09571
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shoi
Segatella hominis
Pathway
shoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KUA50_014320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shoi03021
]
KUA50_014320 (rpoC)
03400 DNA repair and recombination proteins [BR:
shoi03400
]
KUA50_014320 (rpoC)
Enzymes [BR:
shoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KUA50_014320 (rpoC)
Transcription machinery [BR:
shoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KUA50_014320 (rpoC)
DNA repair and recombination proteins [BR:
shoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KUA50_014320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
Peptidase_M23
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
WOZ81178
LinkDB
All DBs
Position
3527898..3532229
Genome browser
AA seq
1443 aa
AA seq
DB search
MAFKKDTKVKNNFTKITIGLASPEEILENSYGEVTKPETINYRTYKPERDGLFCERIFGP
TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERAGHIELVVPVAHIWYFRSLPNKI
GYLLGMPTKKLDAVIYYEKYVVIRPGALEGKTDADGLEINGSHKLDLLTEEEYIDILDNH
LDPENEYLSDDDPNKFVAKMGAEAIYELLQNIDLDSLSYELRDHANNDSSQQRKTEALKR
LQVVEGFRASKGINKPEWMIMKVIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNR
LKRLVEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGRF
RQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSAK
KIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFN
ADFDGDQMAVHLPLSNEAVLEAQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKIRP
GAKGEGLTFYGPEEALIARNEGRCDLHSLVKVIVNDVVDGKPQKRMVETSVGRVIVNQII
PEEVGFFNDVISKKTLRGLISDVIKSVGMAQACEFLDGIKNLGYRMAYVAGLSFNLGDII
IPPEKEEIVSRGQKEIEEITNNYNMGFITNKERYNQVIDTWTHVNTDLGNILMKEMTEAD
QGFNAVYMMLDSGARGSKDQIKQLSGMRGLMAKPQKAGAEGAQIIENPILSNFKEGMSVL
EYFIASHGARKGLADTAMKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLVCTALKNGDE
VISSLYERILGRVSVHDVIHPTTGELIVAAGDQITEAKAKAIEDSPIESVEIRSVLTCES
KKGVCMKCYGRNLATARMVQLGEAVGVIAAQAIGEPGTQLTLRTFHAGGIASNAAANAKI
EAKNKARIEFDELSTVPFVEEDEEGNDINCEKVVSHLAEIRFVDPNTNIILSTLNVPYGS
SLYHKEGEIVEKGTVIAKWDPFNAVIVSQYAGTLKFNDVQKDATYRAEVDETTGLEEKII
TDSKNKAMVPSCDVIDANGEVLGTYNFPVGGHLAIEDGQTIKTGEVLVKIPRAVGGAGDI
TGGLPRVTELLEARNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGDQKKYLVSLSKQ
ILVQEHDAVRAGTPLSDGSVTPGDILAIMGPTAVQEYIVNQIQDVYRLQGVAINDKHFEV
VVRQMMRKVRIDDPGDTTFLEQELVDKLDFAEENDRIWGKKVVTDAGDSENLKPGQIITA
RKLRDENSALKRRDKKLVQVRDAVSATSTQILQGITRAALGTKSFMSAASFQETTKVLNE
AAIRGKVDYLEGMKENVICGHLIPAGTGLRQWDKLIVGSKEEYERMQANRKNVLDYTDPS
IGD
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaaaaaagatacaaaggtaaagaataattttacgaagattaccatcggtctc
gcttctccagaggagattttggaaaattcgtatggtgaggtgactaagcctgaaaccatt
aattatcgtacatataagccggaacgtgacggcttgttctgcgagcgcatctttggtcct
accaaggactatgagtgcgcctgcggcaagtacaagcgtatccgctacaagggaatcgtc
tgcgaccgatgcggtgtagaggtgactgagaagaaggtgcgccgtgagcgtgctggtcac
atcgaactcgtcgtacctgttgctcatatctggtatttccgttcccttcctaataagata
ggttacctactgggtatgcctaccaagaaactggatgctgtcatctactatgagaagtat
gtagtgatccgtccaggtgcactggaaggaaaaactgatgctgacggtctcgaaatcaac
ggctctcataagctcgacctcctcacagaggaagagtatattgatatccttgacaatcat
ctggatcctgaaaatgagtatctttcagatgacgatcctaacaagtttgttgccaagatg
ggtgctgaggcaatctatgaactgcttcagaacattgatctcgacagcttgtcttacgag
cttcgcgatcatgccaacaacgattcaagccaacagcgtaagactgaggctttgaagcgt
cttcaggtagtagagggcttccgtgcaagcaagggcatcaacaagccagagtggatgatc
atgaaggtgattcctgtgactcctcctgaactccgtccgttggttccgcttgatggtggc
cgtttcgctacttctgacttgaacgacctctaccgtcgtgttatcatccgtaacaatcgt
ttgaagcgactcgtagaaatcaaggctcctgaggtaattctccgtaatgagaagcgtatg
ttgcaggaggctgtggacagcttgtttgacaactcacgcaagagttctgctgtgaagagc
gagagtaaccgtccattgaaatcactctctgactctttgaagggtaagcagggtcgtttc
cgtcaaaacctcctcggtaagcgtgttgactactctgcacgttccgtaatcgtcgtaggt
cctgagttgaagatgggtgagtgcggtcttcctaagttgatggctgctgaactttacaaa
ccattcattatccgtaagttgatagagcgtggtattgtaaagacagttaagagtgccaag
aagattgttgaccgtcgcgaacctgttatctgggatatcctggagaacgtgatgaagggt
catccggttatgctgaaccgtgctccgacacttcaccgtcttggtatccaggctttccag
cctaagatgattgagggtaaggctatccagttacacccattggcttgtactgcgttcaac
gccgacttcgatggtgaccagatggctgttcaccttccattgagcaatgaggcagtattg
gaggcacagattctgatgctccagagccacaacatcttgaaccctgccaatggtgcgcct
atcaccgttccttctcaggatatggtgctcggtctttactatattactaagatccgccca
ggtgctaagggtgaaggtttgacattctacggtccggaagaggctctgattgcccgtaat
gaaggtcgttgcgatcttcactctctggttaaggtaatcgttaacgatgttgtagatggc
aagccacagaagcgtatggtggaaacatctgtaggtcgtgtgatcgtcaaccagattatt
ccagaagaggtaggtttcttcaatgatgtcatctcaaagaagacattgcgtggcctgatt
tctgacgtaatcaagagtgtgggtatggcacaggcttgtgaattccttgatggtatcaag
aacctgggttaccgcatggcttatgtcgcaggtctttcatttaaccttggtgatatcatt
atcccaccagagaaggaggaaatcgtatcaagaggtcagaaggagattgaggaaatcacc
aacaactataatatgggtttcattaccaacaaggagcgttacaaccaggttattgatact
tggactcacgttaacaccgacttgggtaatatcctgatgaaggaaatgaccgaggcagac
cagggattcaacgctgtgtatatgatgcttgattccggagcccgtggttctaaggatcag
attaagcagttgtctggtatgcgtggtttgatggctaagcctcagaaggctggtgctgaa
ggtgcgcagatcattgaaaaccctatcctttccaactttaaggagggtatgtctgtgttg
gagtactttatcgcttctcacggtgcccgtaaaggtcttgctgataccgcaatgaagaca
gccgatgctggttacctcacccgtcgtcttgtagacgtttctcatgatgtgatcattact
gaggaggattgtggtacattgcgcggtttggtttgcacagctttgaagaatggcgatgag
gtcatctcttctctctatgagcgtatcttgggtcgtgtatctgtacatgatgtaattcac
cctacaactggcgaattgattgttgctgctggtgaccagattaccgaagctaaggctaag
gcaatcgaggactctcctatcgagagtgtagaaatccgctctgtgctcacttgcgaaagc
aagaagggtgtctgcatgaagtgctacggccgcaacttggctactgctcgtatggtacag
ttgggtgaggctgtgggtgtcatcgctgcacaggctatcggtgagccaggtactcagttg
actctccgtacattccacgccggtggtattgcttccaacgctgcagctaatgctaagatt
gaggcaaagaacaaggcacgtatcgaattcgacgagttgagcactgttccattcgtagag
gaagatgaggaaggaaacgatattaattgcgagaaggttgtaagccaccttgcagaaatc
cgtttcgtagatcctaatacaaatatcatcctttctacattgaatgtaccttatggttct
tctctctatcataaagaaggtgagatcgtagaaaagggtactgtcattgctaagtgggat
ccattcaacgccgtaatcgtgagccagtatgctggtacattgaaattcaatgatgtacag
aaagatgctacttatcgtgctgaggtcgatgaaactactggtcttgaagagaagattatc
accgactctaagaataaggcaatggttccatcttgtgatgtcatcgatgctaacggtgag
gttcttggtacttacaacttccctgtaggtggtcacttggctattgaggatggtcagact
atcaagacaggtgaggttttggttaagattccacgtgccgtaggtggtgccggcgatatt
accggtggtcttccacgtgtaaccgagttgcttgaggcacgtaatccatccaaccctgct
gtcgtttcagaaatcgatggtgaggtaactatgggtaaggtaaaacgtggtaaccgtgag
attatcgtaacttccaagactggcgaccagaagaagtatctcgtatctctttctaagcag
atcctggtacaggagcacgatgccgtacgcgcaggtactcctttgtctgatggtagtgta
actccaggcgatatccttgctattatgggtcctactgccgttcaggagtatatcgtaaac
cagatccaggacgtatatcgtcttcagggtgttgctatcaacgataagcacttcgaggtt
gttgtgcgccagatgatgcgtaaggttcgtatcgacgatccaggtgatactacattcctt
gagcaggagttggtagataaactcgactttgctgaagagaatgatcgtatctggggtaag
aaagttgttaccgatgccggtgatagcgagaatctcaagccaggtcaaattattacagcc
cgtaagttgcgtgatgagaactctgcattgaagcgccgtgataagaaacttgttcaggtg
cgtgatgcagtgtctgctacatctactcagattcttcagggtatcacccgtgccgctctc
ggtactaaaagcttcatgagtgctgcatcattccaggagactactaaggttttgaatgag
gctgctatccgtggtaaggtagattatctcgagggtatgaaggagaatgtgatctgtggt
cacttgattcctgcaggtactggtcttcgtcagtgggataagcttatcgtaggctctaag
gaagaatatgagcgtatgcaggccaacagaaagaatgtgctcgactatactgatccttct
attggtgattaa
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