Segatella hominis: KUA50_016400
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Entry
KUA50_016400 CDS
T09571
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shoi
Segatella hominis
Brite
KEGG Orthology (KO) [BR:
shoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shoi03016
]
KUA50_016400
Enzymes [BR:
shoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KUA50_016400
Transfer RNA biogenesis [BR:
shoi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KUA50_016400
Prokaryotic type
tRNA splicing ligases
KUA50_016400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WOZ83008
LinkDB
All DBs
Position
unnamed:complement(197474..198646)
Genome browser
AA seq
390 aa
AA seq
DB search
MKEFLINNTPVKMWASVCDATAWRQITNLCSLPFLYHHLALMPDLHGGKGMPIGSVLATK
NAVIPNAVGVDIGCGMCAVKTNIKVETIAQDVLRKKIMRGIRKQIPLGMEHHKTAQDEKY
MPQEFDIENMTVVKRQYVSATKQVGTLGGGNHFIELQKDDEGFLWIMIHSGSRNLGKQVG
DYYNNKAAVLNERYFSVVKPEINLPFLPLKTQEFNDYWHEMEYCIAFGLCNRKLMMERIE
EVIADALPEVTFESMINIAHNYAAWETHFDDMCIVHRKGATSAREGEIGIIPGSQGTSSY
IVEGLGNPLSFMSCSHGAGRAMSRTEAVRTLNLEDEINKLEEKGIVHAIRCQQDLEEAAS
AYKNIEEVLSQEMDLVKIRTHLLPIAVIKG
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatttttgattaataacacccctgttaagatgtgggcatctgtttgtgatgca
acggcgtggaggcaaataacgaacctctgtagcttgccttttttgtatcaccacttggcg
cttatgccagacttgcacggtggtaaaggtatgcctatcggctcagtattggcaactaag
aatgccgtgataccaaatgccgttggcgtggacattggatgtggcatgtgtgcagttaag
actaatattaaggtagagaccatagcacaggacgttctacgcaagaaaattatgcgtgga
atcagaaagcagatacctcttggaatggaacatcacaagacggcccaggacgagaagtat
atgcctcaagaatttgatattgagaatatgacagtggtcaagcgtcaatatgtttcagcc
accaaacaggtgggtacacttggaggaggcaatcatttcatagagttgcagaaagatgac
gagggctttctttggattatgattcattcaggttccagaaacctaggcaagcaagttggt
gactattataacaataaggctgccgtgctcaatgagagatatttctctgtggtcaagcca
gagatcaatttacctttccttccgttgaagacacaggaattcaatgattattggcatgag
atggaatactgcatagcttttggactgtgcaatagaaaactgatgatggagcgtatagaa
gaagtcattgctgatgccttaccggaagtgacgtttgagtccatgattaatattgcccat
aactatgcggcatgggaaacccattttgacgatatgtgtatagtgcatagaaaaggagca
actagcgcacgtgagggtgaaattggaatcataccaggttcacaaggtaccagcagctac
attgtggagggacttggcaatccactgagttttatgagttgttcccatggggcaggtaga
gccatgagccgtaccgaggccgtgagaacattgaaccttgaggatgagattaacaagctt
gaagaaaaaggcatcgttcatgccatcagatgccagcaggatttggaggaagctgcttct
gcatataagaacatcgaggaggttctatcacaagagatggacttggttaaaataagaacc
catcttctgcctattgccgtcatcaagggataa
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