Staphylococcus hominis: EGX58_08645
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Entry
EGX58_08645 CDS
T06045
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
shom
Staphylococcus hominis
Brite
KEGG Orthology (KO) [BR:
shom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shom03009
]
EGX58_08645 (rlmD)
Enzymes [BR:
shom01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EGX58_08645 (rlmD)
Ribosome biogenesis [BR:
shom03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EGX58_08645 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Methyltransf_25
Cons_hypoth95
TRAM
TRM5-TYW2_MTfase
N6_N4_Mtase
MTS
PrmA
MethyltransfD12
Methyltransf_11
PDGF
TPMT
Methyltransf_23
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
AYY66985
LinkDB
All DBs
Position
1718287..1719651
Genome browser
AA seq
454 aa
AA seq
DB search
MMINKNDVIKGKVIDLTHEGHGVIKLDRYPIFVPNVLIDEEVEFKVIKVKKNFAIGKLIK
VLKQSEQRVIPPCIYYEKCGGCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIG
MDHPWRYRNKSQLPVGKDKNNKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLN
ELNVSIYNEKNKKGLLRHVVIRTSHYTNEVMIIFVTNGSKFKEAETLVHRLTEVYPNITS
IKQNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAID
YAQLSGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFEC
GKAEEVIIEWKQKGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQ
LLANLYYLKEITPVDMFPHTTHIETVALFERKTL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtgatgattaataaaaatgatgtaataaaaggaaaagtgatagatttaacgcatgaagga
catggtgtgattaaattagatcgttatcctatctttgttcctaatgtgttaattgatgaa
gaagtagagtttaaggtaattaaagtaaagaaaaactttgctattggtaaactaataaaa
gtactaaaacaaagtgagcaaagagtaatacctccttgtatatattatgagaaatgtgga
ggatgccagttacaacatatgtcttatgaatctcagctaaaaatgaaaaaacaacaagtt
gtgaatttatttcataaaaaggcgaaattagaggaaacagtgattcacgatactattggt
atggaccatccatggcgatatagaaataaatcccagcttcctgtaggtaaagataaaaat
aataaaacgataatgggatattaccgtcaaagaagtcatgacatcattgatatggatagt
tgtttaattcaagatgaaaaacaacaagaactaatgaatgatataaaacagtggttaaat
gaattgaatgtaagcatttataatgaaaaaaataaaaaagggttattacgtcatgtagtc
attcgaacaagtcattatacaaatgaagttatgattatatttgtaacaaatggttctaaa
tttaaagaagctgaaaccctagtacatagactaacagaggtatatcctaacataacaagt
attaaacaaaatattaataattcacattcaaatgtcataatgggtaagcaatcgatgact
ttatatggaaaagataaaattacagatcagttaagtgaaactatttttgaaattagtgat
caatcgttttatcaaattaattctgttcaaacagaaaaattatatcagaaagcgatcgac
tatgctcaattaagtggaaatgaaattgttttagatacatattgtggcataggaacgatt
ggactttacatggcaccagtggctaaacatgtatatggtgtcgaaattgtgccatctgct
attcaagatgccaagcaaaatgctttaattaatcattttgataatacaacgttcgaatgt
ggtaaagcagaagaagtgataattgaatggaaacaaaaaggaatagaacctgatgttatc
atggtcgatcctccacgaaaaggatgcgatcaagtctttatagaaacattattagagtta
gcccctaagcgtattatctatatttcatgtaatccttcaacacaacaaagagatgctcag
cttttagctaatctatattatttaaaagaaataacaccagtcgatatgtttccacataca
acacatattgaaactgtggccttattcgaaagaaaaacattgtaa
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