Sturnira hondurensis: 118981720
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Entry
118981720 CDS
T07222
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
shon
Sturnira hondurensis
Pathway
shon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118981720 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shon03019
]
118981720 (MTREX)
03041 Spliceosome [BR:
shon03041
]
118981720 (MTREX)
03009 Ribosome biogenesis [BR:
shon03009
]
118981720 (MTREX)
03016 Transfer RNA biogenesis [BR:
shon03016
]
118981720 (MTREX)
Enzymes [BR:
shon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118981720 (MTREX)
Messenger RNA biogenesis [BR:
shon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118981720 (MTREX)
Spliceosome [BR:
shon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118981720 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
118981720 (MTREX)
Ribosome biogenesis [BR:
shon03009
]
Eukaryotic type
Pre-60S particles
Helicases
118981720 (MTREX)
Transfer RNA biogenesis [BR:
shon03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118981720 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
118981720
NCBI-ProteinID:
XP_036894440
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSAAAPGAKKNKDKGKWKGPPGPAEKAGKPPDGNLQSESTNVGKT
KRDMDFESTDEPIFGKKPRLEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDFRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFSTAMQVLRDAGDLAKGDQK
GRRGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
DKVKSSEEQYNKIVIPNEESVVIYYKIRQQLARLGKEIEDYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLENSATEAAKPAKPDE
RGEMQVVPVLVHLLSAISSVRLYIPRDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHSDPSLETVYTLCERKAQIALDIKSAKRELRRA
RTVLQMDELRCRKRVLRRLGFATPSDVIEVKGRVACEVSSADELLLTEMMFNGLFNDLSA
EQAAALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggggatgagcttttcagcgtgttcgaggacgactccgctgctgcg
ccgggagccaagaagaacaaggacaaggggaaatggaaggggcccccggggcctgcggaa
aaggccgggaaacctcctgatggtaacttacagtccgagtccactaatgttggcaaaacc
aaaagagacatggatttcgagagcacggatgaacccatttttggaaagaagcccaggcta
gaagagtcaataaccgaagacctaagcctggcagacttgatgcccagagtgaaagtacag
tcagttgaaactgtcgaaggctgtacccacgaggtcgcccttcctgcagatgaagattat
ttaccccttaaacctcgagttggaaaagctgcaaaggaataccccttcattcttgatgct
tttcaaagagaagccattcagtgtgtcgataataaccagtctgtgttagtgtctgcacac
acatcagcggggaaaactgtatgtgccgagtatgccattgcattggccttaagggaaaaa
cagcgggtgatattcaccagccccatcaaggctctgagtaaccagaagtaccgggaaatg
tatgaggagttccaggacgtgggcctgatgacgggagacgtcactattaaccctacggcg
tcctgtctcgtcatgaccacagagattttgagaagtatgctgtacagaggctctgaagtt
atgcgagaagtcgcttgggtcatatttgacgaaatccattacatgagagattcagagcgc
ggtgtggtctgggaagaaactatcatcttgcttcccgataatgtccactatgtcttcctg
tcggccaccattccaaatgcccggcagtttgctgagtggatttgccatttacataaacag
ccttgccacgtgatttacacggacttccggcccacgccgctgcaacattacatcttccca
gccggtggggatggcctgcacctggtggtcgacgagaatggggacttccgggaggacaac
ttcagcactgccatgcaggtgctccgggacgcgggggacctggcgaaaggcgatcagaag
ggccggagaggaggcacaaaaggaccgtcaaatgtgttcaagattgtgaagatgatcatg
gagagaaatttccaacccgtgatcattttcagctttagtaagaaggactgtgaagcctac
gctcttcagatgaccaaactggacttcaacacagatgaagagaagaagatggtggaggag
gtgttcagtaatgcaattgattgcttgtcggatgaagataagaagctcccccaggtggag
cacgtgcttcctcttctgaagcgggggatcggcatccatcacggcggcttgctcccgatt
ctgaaagagaccatagaaatcctgttttctgaagggctgataaaggccttatttgcaacg
gagacttttgcaatgggaattaacatgccagccagaacagttttatttacaaatgcccga
aaatttgatgggaaagattttcgatggatttcctccggggagtacatccagatgtctggc
cgtgcgggccggcggggcatggacgacaggggcatcgtgatcctcatggtggacgagaag
atgagcccgaccgtggggaagcagctgcttaagggctcagctgaccctctgaacagtgct
ttccatctgacctacaacatggtgttgaacctgctccgcgtggaggaaatcaaccccgag
tacatgctggagaagtccttctaccagttccagcattaccgggcgatcccaggcgtggtg
gacaaggtgaagagctcagaggagcagtataacaaaatagtgatcccgaacgaagagagc
gtggtcatctattacaagatcagacagcagctggccaggctgggtaaagagatcgaagac
tacattcacaagcccaagtactgcctgccgtttctgcagcccggccgcctggtgaaggtg
aagaatgaaggagatgactttgggtggggagtggtggtgaatttctcaaaaaagtcaaat
gttaagcccaactctggggagctggaccccctctacgtggtggaggtgcttctgcgctgc
agccgagaaagcttggagaactccgcgacggaggctgccaaaccggccaagccggacgag
aggggagagatgcaggtcgttccggttttggtgcatctcctgtctgccatcagcagcgtc
cggctgtacatccccagagacctgcggccgctggacaacaggcagagcgtgctcaagtca
atccaggaagtccagaagcggtttccggacggcgtcccgctgctggaccccatcgacgac
atgggcatccaggaccagggcctgaagaaggtcatccagaaggtggaggcttttgagcac
cggatgtactcccacccgctgcacagcgaccccagcctggagaccgtgtacacgctctgc
gagcggaaggcgcagatcgcactggacatcaagtcggcgaagcgagagctcaggagggcg
aggacggtcctgcagatggacgagctcaggtgccgcaagcgcgtcctcaggcggctgggg
ttcgccacaccctccgacgtcatcgaggtgaaggggcgagtggcctgcgaggtcagcagt
gccgacgagctgctcctgaccgagatgatgttcaacggcctcttcaacgacctgtcggcg
gagcaggcggccgccctgctcagctgcttcgtgttccaggagaactctagcgagatgccc
aaattgacagagcagttagcaggcccacttcgtcaaatgcaggaatgtgctaaacgaatt
gcgaaagtctcagcagaggccaaactggagattgacgaggagacgtacctgagctccttc
aaacctcacctgatggacgtagtgcacacctgggcgaccggggcgacgttcgcccacatc
tgcaagatgaccgacgtctttgagggcagcatcatccgctgtatgcggcgcctggaggag
ctgctgcggcagatgtgccaggcggccaaagccatcgggaacacggagctggagaacaag
ttcgccgaaggaatcaccaaaatcaagagagacatcgtgtttgctgccagcctctacctg
tag
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integrated database retrieval system
