Sturnira hondurensis: 118983839
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Entry
118983839 CDS
T07222
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
shon
Sturnira hondurensis
Pathway
shon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118983839 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shon03019
]
118983839 (EDC4)
Messenger RNA biogenesis [BR:
shon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118983839 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
118983839 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
Beta-prop_HPS5
DUF445
WDR55
Motif
Other DBs
NCBI-GeneID:
118983839
NCBI-ProteinID:
XP_036897359
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGPSADSQRPSNTYNGDLNGLLVPDPLCSGDGTS
ANKPGLRAKPSINLQEKQVICLSGDDSSTCIGISAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHVNSPQLACLDEAGNLFVWHLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEEGSPMVALLHEDRAEVWNLDMLRSNHSTWPVDVSQIKQGFIMVKGHSTYL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHELKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNQELKMWCTVSWTCLQTISFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVTRCRLRHTEVLPA
EEENDSLGADGNHGAGAIESSAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFDFLTAFGESRPELGSEGLGSATHGSQPDVRRIVELPAPADFLNRSSETKPKLMTPD
AFMTPSTSLQQIAASPSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPSEELTLSPKL
QLDGSLTMNSSSSLQASPLSLLPGLLPGPADKLTPKGPGQVPSPASALSLELQEVETLGL
RQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGASAPEDLEPNSMASAASALHLL
SPRPRPGPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCS
SLTESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKV
PTPRLPTKDWKTKGSPRTSPKLKKKSKKDDGDSAMESRLTERQVAEPSEDWPALIWQQQR
ELLELRHSQEELLQRLCSQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQL
QEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSTSVATKLTAVEG
SMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIND
SFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAE
VQHQLHLAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHL
DCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLL
SLIQQLASDLGTRTDLKLSYLEDAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHN
SLGKAARRLSLMLHGLVTPSLP
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctacgggacatcctc
aagctggaccggcccgcgggaggccccagtgcagacagccagaggccatctaacacctac
aatggggacctcaatgggctcctggttccagaccctctctgctcaggtgatggtacttcg
gcaaacaagcctggtctgcgggccaagccatctattaacctacaggagaagcaggtcatc
tgcctctcaggagacgacagctctacctgcattgggatctcggccaaagaggtagaaatt
gtggccagcagtgactctagcatctcaagcaaggcacgggggagcaacaaggtgaaaatc
cagcccgtcgccaagtatgactgggaacagaaatactactatggcaacctgattgctgtg
tctaactccttcttggcctatgccattcgggctgccaacaatggctcagcgatggtgcgg
gtgatcagtgtcagcacttcggagcggaccctgctcaagggcttcacgggcagtgtggct
gacctggccttcgcacacgtcaattccccacagctggcctgcctggatgaggcaggcaac
ctgtttgtgtggcacttggctctggttaatggcaaaattcaagaagagattctggtccac
atccggcagccagagggtacgccgctgaaccactttcgtaggatcatctggtgcccattc
attcccgaggagagtgaagattgttgtgaggagggtagcccaatggtggcccttttgcat
gaggacagggctgaggtgtggaacctggacatgctccgctccaaccacagtacctggcct
gtggatgtcagccagatcaagcagggcttcatcatggtaaaaggccacagcacgtacctg
agtgaaggggccctctcacccgatgggactgttctggctacagcaagccatgatggcttt
gtcaagttctggcagatctacattgaggggcaggatgagccaaggtgtctacatgagttg
aagcctcatgatgggcggcctctctcctgcctcctgttctgtgataaccataagaaacag
gatcctgaggtccctttctggaggttcctcattactggtgctgaccagaatcaggagcta
aagatgtggtgcacggtgtcctggacctgcctgcagaccattagcttctccccagatatc
ttcagctcagtgagtgtgccacccagcctcaaagtttgcctggacctctcagcagaatac
ctaattctcagcgacgtgcagcggaaggtcctttatgtgatggagctgctacagaaccag
gaggaaggccgtgcctgcttcagttccatttctgagttcctactcacccaccctgtattg
agcttcggtatccaggttgtgactcgctgccggctcaggcacacggaggtgctgcctgct
gaggaagagaatgacagcctaggggccgatgggaaccacggagctggtgccatagagtct
tcagctggtgtgctcatcaagctcttttgcgtgcatactaaggcattgcaagatgtgcag
atccgcttccagccgcagctgaaccctgatgtggtcgccccgctccccacccacactgcc
catgaggacttcgatttcctcacagcatttggagaatctcggcccgaactgggctctgag
ggtctgggttcagctactcacggctcccagcctgatgtccgacgcatcgtggagttacct
gcccctgctgacttccttaatcggagcagtgagaccaagcccaagctgatgacacctgac
gccttcatgacacctagcacctccttgcagcagattgctgcctctcctagtagtagtagc
agcagcagcagcagcagcagcagctcctctctcacagcagtatcagccatgagtagtacc
tcagctgtggacccctccttacccaggccatctgaggagctgaccttgagccccaagctg
cagctggatggcagcctgacaatgaacagtagcagcagcctgcaggcaagcccactcagc
ctcctgcctggcctgctcccaggtccagctgacaaattaactcccaaagggcctgggcag
gtacctagtcctgcctctgcactctccctggagctacaggaagtggagaccctggggctg
cgccaggcttcccccagccgtacccgctcccccgatgttatctcttcagcttctactgcc
ctgtcccaggacatccctgagatagcatctgaggccctgtcccgtggctttggtgcctct
gctcctgaggaccttgagccaaacagtatggcctcagctgcctctgcgctacacctgctg
tccccgcggccccggccagggcctgagctcggaccccagcttagcctggatggaggccct
ggggatggggatcggcatagtaccccctccctcctggaggccgccttgacccaggaggcc
acagcccctgacagccaggtgtggccaacagcaccagacattactcgggagacgtgcagc
agtctcacagaaagccccaggaatggcctacaggaaaagcacaagagcctggccttccac
cgaccaccttatcacttgctgcaacaacatgacagccaggacgccagtgctgaacaaagt
gaccacgacgatgaggtggccagcctcgcctctgctgcagggggctttggcaccaaagtt
cccactccacggctgcccaccaaggactggaagactaagggatcccctcggacctcaccc
aaactcaagaagaagagcaaaaaagatgatggggattcagccatggaatcccggctcacg
gagcgccaggtggcagagccctctgaggactggccagcactaatctggcaacagcagaga
gagctgttggagttgcgacacagccaagaagagctgctgcagcgcctgtgcagccagctt
gaaggcctgcagagcaccgtcacgggccacgtagagcgtgccctagagtctcggcatgaa
caggagcagcggcggctagaacgggcactggctgaggggcagcaacggggtggtcagctg
caggaacagctgacacaacagctgtcccaggcactgtcttcagctgtggctgggcggctg
gagcgcagcatacgggacgagatcaagaagacggtgcctccatgtgtctctaggagtcta
gagcctgtggcaggccaactgagcacctcggtggccaccaagctcacagctgtggaaggt
agcatgaaagagaatatctccaagctgctgaaatccaagaacttgacagatgccatcgcc
cgagcagctgcggacacattacaggggccaatgcaggctgcctaccgtgaagccttccag
agtgtggtgctgcccgcctttgagaagagctgccaggccatgttccagcagatcaacgat
agcttccgactgggtacacaggaatacttgcaacagctagagagccacatgaagagccgg
aaggcacgagaacaggaggcgagggagcctgtgttggcccagctgcggggcctggtcagc
acgctgcagggtgccaccgagcagatggcagccactgtgtccagcagtgttcgggccgag
gtgcagcaccagctgcacttggcggtgggcagcctgcaggagtccattttagcacaggtg
caacgcattgttaagggcgaggtgagtgtggcactcaaggagcagcaggccgccgtcacc
tctagcatcatgcaagccatgcgctcagctgctggcacacctgtccctgctgcccatctg
gactgccaggcccagcaagcccatatcctgcagctactgcagcagggccacctcaatcag
gccttccagcaggccctgacagctgccgacttgaacctggtgctgtacgtgtgtgaaact
gtggatccaggccaggtttttgggcagcccccctgcccactctcccagcccgtgctcctt
tccctcatccagcagctggcctctgaccttggcacccgaactgacctcaagctcagctac
ctagaagatgctgtgatgcacctggaccacagtgaccctatcactcgggaccacatgggc
tccgtcatggcccaggtgcgccagaagctcttccagttcctgcaggctgaaccacacaac
tcacttggcaaagcagcccggcgtctcagcctcatgctgcatggccttgtgacccccagc
ctcccttag
DBGET
integrated database retrieval system
