Sturnira hondurensis: 118985979
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Entry
118985979 CDS
T07222
Symbol
PABPC1L
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
shon
Sturnira hondurensis
Pathway
shon03015
mRNA surveillance pathway
shon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118985979 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
118985979 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shon03019
]
118985979 (PABPC1L)
03041 Spliceosome [BR:
shon03041
]
118985979 (PABPC1L)
Messenger RNA biogenesis [BR:
shon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118985979 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
118985979 (PABPC1L)
Spliceosome [BR:
shon03041
]
Complex C
Other components
Complex C specific factors
118985979 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_5
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118985979
NCBI-ProteinID:
XP_036900655
LinkDB
All DBs
Position
Unknown
AA seq
672 aa
AA seq
DB search
MNASGTGLRLASXYVGDLHPDVTEALLYKKFSPAGPILSIRVCHDVTTRRSLGYAYINFQ
QPADAKRALDTMNFEVIKGQPIRIMWSQRDPGLRRSGVGNIFIKNLEESIDNKALYDTLS
TFGNILSCKGVCDDHSSLGFGFVHFETYEAAQKAISSMNGMLLNDRKVFVGHFKSQQEWE
AELGARAAEFTNIYVKNLQVDVDEQGLGQLFSQFGKMLRVKVMRDDSGHSRGFGFVNFEK
HEEAQKAVMDMNGKEVSGRLLFVSQAQKWVERQNELKRSFEQMKQDGLNRCQGVNPYVKN
LDDSIDNEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEDATKAMTEMNGCILGS
KPLYQRKEEQKAVLTNQCMQQHLCTWALGGPTLGSFLQPTSYFPPTVPQVRACLQPQVEW
EESSRADIGSQPASARNSGSPRYCGSGPSVQPATPRWMTQPPGSSPNTGTQTTGPSAVPL
LGTLSLPDCPYLGPCSPLPEPSWRPVLTWQVKCFRALPVRGGEGLCPWDHVQVPEPAVCF
PGQEPLTTSMLATAPLRKQKQMIGEHLYSLIYDVHTQLGGKITGMLLEIDNSELLLMLXV
PESLSAKCCRLRFVSQEALREEVGRSEGQAWLGRGFGWGEQKRHHAEATAGVDQGSPACA
SPRSSCHSPVVQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagtggcacgggtctccggctcgcctccnnctacgtgggcgacctgcatcca
gacgtgactgaggccctgctctacaagaagttctcgcccgcgggccccatcctgtccatc
cgtgtgtgccacgacgtaaccacccgccgctcgctgggctatgcctacatcaacttccag
cagccggccgatgcaaagcgggcactggacacaatgaactttgaggtgatcaaagggcag
cccatccgcatcatgtggtcccagcgagacccagggcttcgcaggtcgggtgtgggcaac
atcttcatcaagaacctggaggagtccattgacaacaaggccctatacgacaccttgtcc
acctttgggaacatcctctcttgcaagggggtgtgtgatgatcacagctccctcggtttt
ggctttgtccattttgagacctatgaggccgcacagaaggccattagcagcatgaatggg
atgctgctgaatgaccgtaaagtcttcgttggccacttcaagtcccaacaggagtgggaa
gctgagctaggggctcgggccgcggagttcaccaacatctatgtgaagaacctccaagtg
gatgtggacgagcagggcctggggcagctcttctcccagtttgggaagatgctaagggtg
aaggtgatgagggatgacagcggccactcccgaggctttggctttgtcaactttgagaag
catgaggaagcccagaaggctgtgatggacatgaacgggaaggaggtgagcgggcggctg
ctcttcgtgagccaggcccagaagtgggtggagcggcagaatgagcttaagcgaagtttc
gaacagatgaagcaggacgggctgaaccgttgccagggtgtgaacccgtacgtgaagaac
ctggatgactccattgataatgagaaactgaggaaagagttctctccctacggagtgatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtgtgtttt
tcctctccagaagacgcaacgaaggccatgacggagatgaacgggtgcatccttggcagc
aagccgctgtaccagcgcaaagaggagcagaaggccgtcttgaccaaccagtgcatgcag
cagcacctctgcacgtgggccctgggcggccccaccctgggctccttcctgcaacccacc
agctacttcccgcccaccgtgccccaagtgagggcctgcctgcaaccccaggtggagtgg
gaagagagctcacgggcagacataggttcccaacctgcctctgccagaaacagcgggtcg
cctcggtactgcggctctggcccctctgtccagcctgctacccccaggtggatgacccag
cctcctgggtcctcccccaacactggtacccagaccaccggcccgtccgctgtgcccttg
ctggggactctgtccctccccgattgtccttaccttggcccctgctcccctcttccagag
ccttcctggaggcctgtgctcacctggcaggttaagtgtttccgggccttgcctgtccgt
ggtggtgaagggctgtgtccctgggaccatgtgcaggtcccggagcctgctgtgtgcttc
cctggacaggagcccctgaccacgtccatgctggccacagcaccactccgcaaacaaaag
cagatgattggtgagcatctctactcccttatctacgatgtccacacacagctgggtggc
aagatcacgggcatgctgctggagatcgacaactcagagctgctgctcatgctgngtgtc
ccagagtccctcagtgccaagtgctgcaggctgcggtttgtctcccaggaggccttgcgt
gaggaggtggggcggagcgaagggcaggcttggctgggtcggggcttcggctggggggaa
cagaaacgccaccatgctgaggccactgcgggtgtggaccagggcagccccgcttgtgcg
agcccgaggagcagctgccactcaccagtggtgcagtga
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