Sturnira hondurensis: 118986766
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Entry
118986766 CDS
T07222
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
shon
Sturnira hondurensis
Pathway
shon03030
DNA replication
shon03410
Base excision repair
shon03420
Nucleotide excision repair
shon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118986766 (LIG1)
03410 Base excision repair
118986766 (LIG1)
03420 Nucleotide excision repair
118986766 (LIG1)
03430 Mismatch repair
118986766 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shon03032
]
118986766 (LIG1)
03400 DNA repair and recombination proteins [BR:
shon03400
]
118986766 (LIG1)
Enzymes [BR:
shon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118986766 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
118986766 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118986766 (LIG1)
DNA replication proteins [BR:
shon03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118986766 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118986766 (LIG1)
DNA repair and recombination proteins [BR:
shon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118986766 (LIG1)
NER (nucleotide excision repair)
Other NER factors
118986766 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
118986766 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
Motif
Other DBs
NCBI-GeneID:
118986766
NCBI-ProteinID:
XP_036901762
LinkDB
All DBs
Position
Unknown
AA seq
390 aa
AA seq
DB search
MGKLVGRVFKTSSLKPNTASHNNASWPTDTDAFLEHSCRSIQRERGRGLEQVLEHCRPGP
GLPLEPVLASPTLGISEVLKGFKEXSFHCEYKSDGQRAQIDVLEGRKATIFSRNQEDNTG
KCPDTISHSPKMKLPSVTSFILHVEAMAWDRGKKQIQXIQVLTARKHEEVDAAEIQAQVC
LYAFDLIHLNGESRVXEPLSGCRQLLQNFTETNAEFAFSTSLVTKHTHQXAPASHNWLKL
KKDYPDGVGDPLDIPVIGAYLGQGKPAAHYGSFLLASYGQQREXGAPAICKHGTGFILLA
LALPTPHXGQVAXEVKFVHLSLSPSYPPASDLADREKGISLSFSQFISFSEDXKPXETTT
GAQVACLYKQQSQIQNQEGTDLDFNLEDFY
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacttgttggaagagtcttcaaaacaagttccctgaagcccaatacagcctct
cacaacaacgccagctggcccactgatacagatgcgttcctagaacactcatgtcgtagt
attcagagagaaagaggacggggcctggaacaggtcctggaacactgcaggccgggtcca
gggcttcccctggaaccagtgttagccagccccaccctgggcatcagtgaggtcctaaaa
ggcttcaaagagngcagcttccactgtgagtacaaaagtgatgggcagagagcacagatc
gatgtcctggaaggcaggaaggcgacaatcttcagcaggaatcaggaagacaatactggc
aagtgccctgataccatcagccacagccccaagatgaaactcccttcagtcacatcattc
atcctgcatgtggaagccatggcctgggaccggggaaagaagcagatccagngcattcaa
gtgctcaccgcccgcaaacacgaggaggtggatgcagcggagatccaggcgcaggtgtgt
ttgtatgcctttgatctcatccacctcaacggagagtcccgggtanctgagcccctttct
gggtgcaggcagctgctccagaacttcacggagacgaatgccgagtttgccttctccact
tccctggtcaccaaacacacgcaccagnnagcgccagcatcacacaactggctcaagctg
aagaaggactacccggatggcgtgggtgaccccctggatatcccggtgattggtgcctac
ctgggccaggggaagccggctgcccactatgggagcttcttgctggcctcctatggccaa
caaagagagtgaggagctccagccatatgcaagcatggaactggctttatcctcctggcc
ctggcgcttcctaccccacacnctgggcaggtcgcgtgagaggtcaagttcgttcatctc
tccctctcccctagctaccctcctgcctcagacctggcggacagggagaaggggatttcc
cttagcttctctcagtttattagcttcagtgaagactagaaaccataggagacaaccaca
ggtgcccaggtggcctgtctgtacaagcagcaaagtcagattcagaaccaggagggcaca
gacttagactttaacctggaggacttctactag
DBGET
integrated database retrieval system
