Sturnira hondurensis: 118995474
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Entry
118995474 CDS
T07222
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
shon
Sturnira hondurensis
Pathway
shon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118995474 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shon03019
]
118995474 (PNLDC1)
Enzymes [BR:
shon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118995474 (PNLDC1)
Messenger RNA biogenesis [BR:
shon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118995474 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
118995474
NCBI-ProteinID:
XP_036914499
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRTNLSRSQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSLEGESNKYVAHSYNFFLFPTTFGTLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHSILTGDWRVRSSLDKDQIKAVIDKVTRWLTLAEEGDC
MTLPGITGFQAFPVQLVLRQALPGIWTVRTDHGVTVKKVSKQHHWYLGSTSCDREGCWKE
KLLLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFKPLPESYHQFKLNIHRLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASECGKYAETKCPH
EAAYDAFLCGSVLLKVAHLLLWRAHSAGPVPEPSFALCLDVLAPYLNQVNLIRAGVPKIN
FSGPDCSSVRPPILILSVSRWPGVSEEQVYREFQSLCKFDVRRLTRNQFLLLTNKFKDAR
SVLKEHRGHPTLQVALYRHWRHSPDINCLLQVCGIVTTWALLAFLLGRPSP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctccctttgctgcaggagcttgtcctg
ggcgcggacttcgtgggtctggacatagagttcacgggcctccgcaccaacctgtccagg
tctcagcaaatcagccttttcgacttgccatccgagtggtatctaaagacccgtcagagt
gttcagcagtttacaatctgtcagattggactgtctgtgttttccagccttgaaggggag
tcaaacaagtacgtagcccattcatataacttctttctcttcccgacaacatttgggact
ttggactcggaattctctttccaggcttctagtgttcagtttttgaaccagtacggcttc
gactacaacaagtttctcaaaaacggaatcccctatatgaacgaagagcaggagaagaag
atcaaacacagtatcctgaccggggactggagagttcgcagttctctggataaggaccaa
atcaaggcagtgattgacaaggtgacgcggtggctgaccctggcagaggaaggcgactgc
atgactctccctggcatcactggcttccaggccttcccggtccagctggtgctgaggcag
gccctcccaggcatctggacggtccggacagaccacggggtgacagtgaagaaagtgagc
aagcaacatcactggtaccttgggagcacctcctgtgaccgagagggttgttggaaggag
aagctgctgctctccgcgaggggtttttccgtgtttttccagatgctggtgaaagcccag
aagcccttagtggggcataacatgatgatggacctgctgcacctccacgagaagttcttc
aaacccctcccagagagctaccatcagtttaagctgaatatccaccgcctgtttcccgtc
ctcattgacactaaaaacgtgacaaaggacatatggaaggaactgaatttcccaagggtt
tcaaatctttccgaagtttatgaagtcctgaacagtgacttgaatcccaccaagaattct
gggccagtgatcattcatgccagcgagtgtgggaaatacgcagagacaaagtgcccgcac
gaggcagcctatgacgccttcctctgtggctcagtccttttgaaagtggcgcacctgctc
ctgtggagagcacacagtgccggccccgtgcctgagccctccttcgccctgtgcctcgac
gtgctggccccctacctgaaccaggtgaacctgatccgagccggggtcccaaagattaac
ttttctggccccgattgttccagtgtccgaccccccatcctcatcctcagtgtcagcagg
tggcctggggtcagcgaggagcaagtctaccgagagttccagagtctctgcaagttcgac
gtccggcgactcacacggaaccagttcctgcttctgaccaataagttcaaggacgcccgg
agcgtcctcaaggagcacaggggccaccccaccctgcaggtcgccctctatcggcactgg
agacactcgccggacatcaactgcctgctgcaagtctgcggcatcgtgaccacctgggcg
ctgctcgcgttcctcctgggaagacccagcccctga
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