Sturnira hondurensis: 118995954
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Entry
118995954 CDS
T07222
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
shon
Sturnira hondurensis
Pathway
shon04820
Cytoskeleton in muscle cells
shon04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118995954 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
118995954 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shon00536
]
118995954 (COL27A1)
Glycosaminoglycan binding proteins [BR:
shon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118995954 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118995954
NCBI-ProteinID:
XP_036915014
LinkDB
All DBs
Position
Unknown
AA seq
1842 aa
AA seq
DB search
MGAGSARGPRGTAAVAARGGGFLFTWILVSVACHLASTQGAPEDVDVLQRLGLSWTKAVG
GRNPPPPGVIPFQSGFIVTQRARLQAPTTAIIPASLGTELALVLSLCSHRVNHAFLFAVR
SRKHKLQLGLQFLPGKTVIHLGPRRSVAFDLDVHDGRWHHLALELRGRTVTLATACGQRR
VPVPLGFHRDPVLDPEGSFLFGKMSPHAVQFEGALCQFSIYPVAQVAHNYCTHLRKQCGQ
ADMYRPQLGPLLPRDPGAPLAFQTDLALLGLENLTTAEPAPGSRPAGRVTVVPTTPAKPL
RTSNTNPHKPVSVREQTRTALPPAKLSASEALPPVAPASPASCTPPAQALQKSTATQIPK
RHPIKPSAPSPSVPPVESPRPTQEAAPPSFTKSAPPTRKPAPPTLHPAPAKVSHPSVKPI
QRNPVTPRPPPPSVRPLSPVTGASQKPFPPAVRTEAKMSSRAGELAPARTSTHRPPRPTT
STPSPASRPGSTRTAQPLATAMPPTLTPGSVPSGSKKPTGSEDTKKARPKSSPRKPFPLR
AGKAARDDPVRDLTTRPSPRQPRPGQQSTPAPVLVPARFLSSSPWPTSTGYSLLHLVGPT
PFPLLMGPPGPKGDCGLPGPPGLPGLPGPPGTRGPRGPPGPHGNPGLPGPPGAKGQKGDP
GLSPGKAHDGTKGDMGLPGLLGNPGPLGRKGFKGYPGPAGHPGEQGQPGPEGSPGAKGYP
GRQGLPGPIGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGER
GPPGLDGNPGELGLPGPPGVPGLIGDMGALGPIGYPGPKGMKGLMGNVGEPGLKGDKGEQ
GVPGVSGDPGFQGDKGSQGLPGLPGARGKPGPMGKVGDKGSLGFPGPPGPEGFPGDIGPP
GDNGPEGVKGKPGARGLPGPPGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGPDGLK
GEPGNSGRPGPVGEQGLLGFIGLVGEPGIVGEKGDRGMMGPPGAPGPKGSMGHPGMPGGV
GTPGEPGPPGPPGSRGPPGMRGTKGRQGPRGPDGPAGEQGPRGLKGPPGPQGRPGQPGQQ
GTPGERGHLGTRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEP
GLPGEAGMKGDLGPLGPPGEQGLIGQRGEPGLEGDNGPAGPDGLKGDRGDPGPDGERGEK
GQEGLMGEDGPPGPPGVTGVRGPEGKPGKQGEKGRTGAKGAKGYQGQLGEMGAPGDPGPP
GTPGPKGSRGSLGPTGAPGRMGPQGEPGLAGYDGHKGVVGPLGPPGPKGEKGEQGEDGKA
EGPPGPPGDRGPVGDRGDRGQPGDPGYPGQEGVQGLCGNPGQQGLPGHPGPRGRPGPKGS
KGEEGPKGKQGKAGAPGRRGIQGLQGLPGPRGVVGRQGPEGIAGPDGLPGRDGQPGQQGE
QGDDGAPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQVGPPGKRGTEGGTGLPGN
QGEPGSKGQPGDSGEMGIPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPLGT
LGPSGRPGPKGDKGSQGNLGLQGPRGPPGPRGRPGPPGPPGSPTHFQQDDLGAAFQTWVD
TNGALRAEVYSHPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQ
KMADGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSE
VTQHITIHCLNMAVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRW
HHTLFTFRTQDPQQLPIVGVDNLPQASSGKQYRLEVGPACFL
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatccgcgcgggggccccgaggcacagcagcggtggcggctcgtgggggg
gggtttctcttcacctggatcttagtctcagttgcctgtcacctggcctccacccaagga
gctcctgaagatgtggatgtcctccagcggctgggcctcagctggaccaaggcagtgggt
ggccggaaccccccaccgccaggggtcatcccgttccagtcaggcttcatcgttacgcag
cgggcccggctccaggcccccacgactgccatcatccctgcctccctgggcacagagctg
gcgctggtgctgagcctctgctcccaccgggtgaaccatgccttcctcttcgctgtccgt
agccggaagcacaagctgcagctgggcctgcagttcctccctggcaagacggtcatccac
ctggggccccggcgctctgtggccttcgacctggacgtgcatgatgggcgctggcaccat
ctagccctggagcttcgtggccgcacagtcaccctggccacggcctgtgggcagcgccgg
gtgcccgtccctctgggtttccacagggacccagtgctcgacccggagggctccttcctc
tttggaaagatgagcccacatgcggtccagtttgaaggtgctctgtgccagttcagtatc
taccctgtggcgcaggtcgctcacaattactgtacccacctgagaaagcagtgcggacag
gctgacatgtaccggccccagctggggccccttctcccccgagaccctggtgcacccctt
gccttccagactgaccttgccctgctaggcctggagaacctgaccactgccgagccagcc
ccgggttcacggccagcaggcagggtgactgtggtgcccaccacacctgccaagccccta
aggactagcaacacaaaccctcacaagcctgtctcagtgcgggaacaaacccggaccgcg
ctgccacctgccaagctgtcagcgagtgaagcgcttcctcccgtggccccggcctctcct
gccagctgcaccccacctgcccaggcattgcaaaagagcacagccacccaaatccccaaa
cgccacccaatcaagccttcagccccttctccttcagttccccctgtcgaaagccctcgc
cccacccaggaagcagctccaccttcattcacaaaatcagctcctcccaccaggaagcca
gcgccaccaactttacacccggctcctgccaaagtgtcccatccctcagtgaagccgatc
cagaggaaccctgtcacgcccagacccccaccacccagtgtccggcccctgtcccccgtc
actggtgcctcccaaaagccctttcccccagcggtccggacagaggccaagatgagcagt
cgtgccggtgagctggctcctgcccgcaccagcacacacagacctccccgacccaccact
tcgaccccgtcacctgcctcccgtcctggctctaccaggaccgctcagccactagccaca
gcgatgcctcctaccctcactcctggttcagtcccctctggaagcaagaagcccactgga
tcagaagacacaaagaaagccagacccaagagcagcccccggaagcccttccccctccga
gccgggaaggcagccagggatgaccctgtccgtgatctgacaacacggcccagccctagg
cagccccggcccggccagcagagcaccccggccccggtgttggtcccagcgcgattcctg
tcctccagcccctggcccacgagcactggctattcgctcctccacctggtgggacccacg
cctttcccgctgctgatgggacctccagggcccaagggagactgtggtttgccgggtccc
cctgggctgcctgggctccctggaccccccggtacacgggggcctcggggtcctcctggg
cctcatggaaatccaggcctacctggccctcctggagccaaaggacagaaaggggacccg
gggctctccccaggaaaggcccatgatgggacaaagggcgacatgggcttgcctgggctt
cttgggaatccgggacctcttggacgaaagggattcaagggctatcctggaccagcgggg
caccccggagaacaggggcagccgggaccagagggcagtccaggggccaaaggttaccct
ggcaggcaggggttacctggtcctataggagaccctggccccaaaggcagccggggctac
atcgggcttccagggctcttcggcctgccagggtccgatggagagcgcggcctgcctggc
gttcctggcaagaggggcaagatgggtaggccggggtttcccggagactttggggaaaga
ggccccccgggactggatggaaaccctggagaactgggcctgccagggcccccaggagtc
cccggcctcattggcgacatgggagcactgggtccaattggctacccaggacctaagggc
atgaagggactgatgggaaacgtgggggagcccggactgaaaggtgataagggtgaacaa
ggggttccaggtgtgtcaggagatcccggattccaaggagacaaggggagccagggattg
ccggggctcccaggtgcacgggggaagccagggcctatgggcaaagttggagacaaaggg
tcccttgggtttcctgggccccctgggcccgagggattccctggagacatcggcccccct
ggggacaatggcccagaaggtgtgaagggtaagcctggagctcgaggcctgccgggaccc
ccggggcagctggggcctgagggtgatgagggacccatggggccacctggggctcctggc
ttggagggtcagcctggcaggaaagggtttcctgggaggcctggccctgatggcttgaag
ggggagccaggcaactctggacggccgggacctgttggtgagcagggacttctgggattc
attggtctggttggggagccaggaatcgtgggagaaaagggtgaccggggcatgatggga
cccccaggagcgcctggacccaaggggtcaatgggtcatcctggaatgccaggtggagtc
gggacccctggagagcctggacccccgggtcctccaggatctcgaggtccgccaggaatg
aggggaacaaagggacgccagggcccccgaggaccagacggaccagctggggagcagggg
ccccggggtctgaagggccctccaggaccgcagggccgaccgggccagcctgggcagcag
ggcacacctggtgagcgagggcacttgggcacccgaggctttcctggcatcccgggtccc
tcgggcccgccaggcaccaaaggcctcccaggagaaccgggccctcagggaccccaggga
ccaattgggcctccaggagagatgggacccaaggggccacctggtgcagtgggagaacca
ggacttcctggggaagccgggatgaagggtgaccttgggcctcttggcccccctggggag
cagggcctcattgggcagcggggagagccaggcctcgagggggacaatggccctgcaggg
cccgacgggctgaagggggacaggggtgacccagggcctgatggtgagcgtggcgagaag
ggccaggagggactgatgggcgaggatgggccccccggcccccctggcgtcactggcgtc
cggggtcctgaaggaaagccagggaaacaaggcgagaagggccggacgggagccaagggt
gccaagggctaccaaggacagctgggcgagatgggagctcctggagaccccggaccccct
ggcaccccaggcccgaaagggtcccggggcagcctgggaccaacgggtgctcctggacgg
atgggaccccagggagaaccaggactggctggttacgatggacacaaaggcgtcgtggga
cccctggggcctcccggaccaaagggagaaaagggtgagcagggcgaggacggcaaggcc
gaggggcccccaggaccacccggagaccggggccccgttggggatcgaggagaccgtggg
caaccaggggaccctggataccctggacaggagggtgtacaaggcctctgtggaaacccg
ggccagcagggcctgcctgggcatccgggaccccgggggcggccgggccccaaaggatca
aaaggggaagagggaccaaagggaaagcaaggcaaggccggggcccctggacggaggggg
atccagggtctgcagggcctgccagggccccggggcgtggtggggagacagggccccgaa
ggtattgctggaccagatgggcttcctggcagggacggtcaaccagggcagcagggggaa
caaggagacgatggggcccctggccccatgggccctgctgggaagagaggaaatccaggt
gtggctggcttgcccggagcacagggacccccaggtttcaagggtgaaagtggattaccc
gggcaggtgggtccacccgggaagcgagggacagagggcggaacagggcttcctgggaac
cagggggagcctggatccaaaggccagccgggtgactctggcgagatgggcatcccagga
atggctggcctctttggacccaaggggccccctggagacattggcttcaaaggcatccag
ggccctcgggggcctcctggcttgatgggaaaagaaggcatcattgggccccttgggacc
ttgggaccttcaggacgcccgggtccaaagggcgacaaaggcagccaagggaacttggga
ttgcaaggtccgaggggtcctcctggccccagaggacgacctggcccaccgggccctcca
gggagccccacccactttcaacaagatgaccttggggcagctttccagacctgggtggac
actaatggagcactgagagcagaggtttacagccaccccgaccggctggtgctggaccag
ggaggggagatattcaaaaccctacactacctcagcaacctcatccagagcatcaagact
cccctgggcaccaaagagaaccccgcccgggtctgccgggacctcatggactgtgagcag
aagatggcagacgggacctactgggtggacccgaaccttggctgctcatccgataccatt
gaagtttcctgcaacttcacacatggtggacagacatgtctcaagcccatcacagcctcc
aaggtggagtttgccatcagccgggtacagatgaactttctgcacctgctgagttctgag
gtgacgcagcatatcaccatccactgccttaacatggccgtgtggcaggaaggcaccggg
cagaccccagccaagcaggctgttcgcttccgggcctggaacgggcagatctttgaagct
gggggtcagttcaggccggaagtgtccatggatggctgcaaggtccaggatggccgctgg
catcacacgctctttaccttccggacccaggatccccagcagctgcccattgtcggcgtg
gacaacctccctcaggcctcatcagggaaacagtatcgcctggaagttggacctgcatgc
ttcctctga
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integrated database retrieval system
