Sturnira hondurensis: 118996188
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Entry
118996188 CDS
T07222
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
shon
Sturnira hondurensis
Pathway
shon04120
Ubiquitin mediated proteolysis
shon04137
Mitophagy - animal
shon04141
Protein processing in endoplasmic reticulum
shon05012
Parkinson disease
shon05014
Amyotrophic lateral sclerosis
shon05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118996188 (PRKN)
04120 Ubiquitin mediated proteolysis
118996188 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118996188 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
118996188 (PRKN)
05014 Amyotrophic lateral sclerosis
118996188 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
118996188 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shon04131
]
118996188 (PRKN)
04121 Ubiquitin system [BR:
shon04121
]
118996188 (PRKN)
03029 Mitochondrial biogenesis [BR:
shon03029
]
118996188 (PRKN)
Enzymes [BR:
shon01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
118996188 (PRKN)
Membrane trafficking [BR:
shon04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
118996188 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
118996188 (PRKN)
Xenophagy
Other xenophagy associated proteins
118996188 (PRKN)
Ubiquitin system [BR:
shon04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
118996188 (PRKN)
Mitochondrial biogenesis [BR:
shon03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
118996188 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
118996188
NCBI-ProteinID:
XP_036915397
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVDPTTSIFQLKEVVAKRQGVPADQLRVIFAGKELGNDSVVQSCD
LDQQSIVHVVLRPGREGQEMTSTGRDRPWSAMGAFRREPESLTRVDFSGSVLPTDSVGLA
VILDEDSGNSALSARRAAGRPAYNSFYVYCKGPCQRVQPGKLRVRCGTCQQATLTLAQGP
SCWEDVLIPNRMSGECQSPGCPGTKAEFFFKCGAHPTSDKDTSVALNLITTNSRNITCIT
CVDVRSPILVFQCDSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQHYGAEEYVLRMGGVLCPRPGCGAGLLPEPEQRDVTCEGGDGLGC
GLVFCRDCREAAHEGECSALAASAAMTQVYRVDEKAAEQARWEESSKETIKQTTKPCPRC
QVPVEKNGGCMHMKCPQPQCQLDWCWHCGCEWSRTCMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtgaggttcaactccagccatggtttcccagtggaggtcgatcctacc
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccggctgaccag
ctgcgggtgattttcgcggggaaggagctcggcaatgactcggtggtgcagagctgtgac
ctggaccagcagagcatcgtccatgttgtgctgagacccgggagagaaggccaggaaatg
acctccactggcagggaccgtccctggagcgccatgggggcctttcggagggaacccgag
agcttaactcgcgtggacttcagtggctctgtcctcccgaccgactcggtgggtctggcc
gtcattctggatgaagacagcgggaatagcgccctgtcggccagacgcgcagcaggtaga
ccagcttacaacagcttttatgtttattgcaaaggcccctgtcagagagtgcagccagga
aaactcagggtgcgctgcggcacctgccaacaagccacgctcaccttggcccagggcccg
tcctgctgggaagatgtcttaatccccaaccggatgagcggcgaatgccagtctccaggc
tgcccgggaacgaaagcagagtttttctttaaatgcggagcacacccgacctctgacaaa
gacacatctgtagctttgaacctgatcacgacgaacagccggaacatcacctgcataact
tgtgtggacgtcaggagccccatcctggtgttccagtgcgactcccgccacgtgatctgc
ctggactgcttccacctctactgcgtgaccaggctgaacgaccggcagttcgtccacgac
cctcagctcggctactctctgccttgtgtggccggctgccccaactccttgattaaagag
ctccatcacttccggattcttggagaagagcagtacaaccggtaccagcactatggcgcg
gaggagtacgtgctacgcatggggggcgtgctgtgcccccgcccgggctgcggggccggg
ctgctgccggagccagagcagagggacgtcacctgcgaagggggcgacggcctgggctgc
gggctcgtgttttgccgggactgtagggaagcagcccacgaaggtgaatgcagcgcgctg
gccgcctcagcagcaatgactcaggtctacagagtggacgagaaggcggccgagcaagct
cgctgggaggagtcctccaaagagacgatcaagcagaccaccaagccctgcccccgctgt
caggtgcccgtcgagaagaacggaggatgcatgcacatgaagtgcccgcagccccagtgc
cagctggactggtgctggcactgcggctgcgagtggagccgcacctgcatgggcgaccac
tggttcgacgtgtag
DBGET
integrated database retrieval system
