Sturnira hondurensis: 119002191
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Entry
119002191 CDS
T07222
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shon
Sturnira hondurensis
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shon03016
]
119002191 (RTCB)
Enzymes [BR:
shon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119002191 (RTCB)
Transfer RNA biogenesis [BR:
shon03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119002191 (RTCB)
Prokaryotic type
tRNA splicing ligases
119002191 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
119002191
NCBI-ProteinID:
XP_036923809
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKTNKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactacaatgatgagctgcagtttttggaaaagactaataaaaactgctgg
agaatcaagaaagggttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gccctggaaaaattaatgtttgaggaattaaggaatgcctgtcgaggtgggggtgttggt
ggcttcctacctgccatgaagcagattggcaatgtggcggccctgcctgggattgttcat
cgatctattgggcttcctgatgtgcactcgggttatgggtttgctattgggaacatggcg
gcctttgatatgaatgaccctgaagcagtggtgtccccaggtggcgtcggattcgacatc
aattgcggtgtccgcttgctcaggaccaatttagatgaaagcgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgtcggggtggggtccaaaggtgtc
atcccaatgaatgccaaagacttggaagaggccttggagatgggtgtggactggtcgcta
agagaaggctatgcctgggccgaagacaaggagcactgtgaggagtatggcagaatgctg
caggccgaccccaacaaggtctctgcgagggctaaaaagagaggccttcctcagttgggg
accctgggagcaggtaaccactacgcagaaatccaggttgtggatgagattttcaatgag
tatgctgctaagaagatgggcatcgaccataaagggcaggtctgtgtgatgatccacagt
ggaagcagaggcttgggccaccaggtagccacagacgccctggttgccatggaaaaggcc
atgaagagagacaagatcatagtcaacgaccggcagttggcctgtgctcggatctcgtct
gcggagggccaggactacctgaagggaatggccgcggcagggaactacgcctgggtcaac
cgctcttccatgaccttcttgacccgtcaggcttttgccaaggtcttcaacacaaccccc
gatgacttggacctacacgtgatctatgatgtttctcacaacatcgccaaagtggaacag
cacgtggtggacggaaaggagcggaccttgttggtgcacaggaaggggtccacccgagct
ttccctccacaccatcccctcattgctgtcgattaccagctcactgggcaaccagtgctc
attggtggcaccatgggaacctgcagttacgttcttactggcactgaacagggcatgacg
gagacctttggaacaacctgtcatggagcgggccgtgcgttgtcccgagccaaatctcgg
cgtaatttagatttccaggacgtgttagacaaattggcagatatgggaattgcaattcgt
gttgcctcacccaaactggttatggaagaggctcccgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgcgggaatcagcaagaaggccattaaactgaggccgatt
gctgttatcaaagggtag
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