Shewanella putrefaciens 200: Sput200_0159
Help
Entry
Sput200_0159 CDS
T02015
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shp
Shewanella putrefaciens 200
Pathway
shp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sput200_0159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shp03021
]
Sput200_0159
03400 DNA repair and recombination proteins [BR:
shp03400
]
Sput200_0159
Enzymes [BR:
shp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sput200_0159
Transcription machinery [BR:
shp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sput200_0159
DNA repair and recombination proteins [BR:
shp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sput200_0159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADV52648
UniProt:
E6XQ82
LinkDB
All DBs
Position
184034..188251
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDDGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEAAVEAGDIIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTEFLEGEQVEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKVTASEAEQNLADLLNMAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtctgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtcacccagactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagtcgcgcacatttggttcttaaaatcactg
ccgtcccgtatcggtttaatgctggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcattcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgttg
acagaagaaacgtatctggatgcgttagaagaatacggtgatgagttcgaagcgaaaatg
ggtgccgaagctgttctagaactgctgcgcgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattaccttcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagccttcttcacttcaggcaacaagcctgaatggatgatcttaaaa
gtactgcctgtgttaccgcctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgcaattaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttgggtaaacgcgttgactattctggtcgttcggtcattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaaaccattt
atctatggcaagctggaaggtcgtggcttagcgactaccatcaaagcggctaagaagatg
gttgagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtaatgcttaaccgtgcaccaacactgcacagattaggtattcaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagttcgtatcactgaaaccattattggtgatgat
ggtgagcgcactgaacaacgccgtatcgttgatacgactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacctgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtcggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagctgaa
gttcttgaaattcaagagcagttccaatctggtctagtcacagccggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttctaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgctgcacagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaacctgacggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtcttgccgatactgcattgaaaacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgccgttgatgtgttctatccaggcaccgaagatgtactagcaccacgt
aacacgctgctcgatgaagcatggtgtgacaagttagaagagcattcaatcgatgaagtg
attgtgcgttctgtgattacctgtgataccgatttcggtgtctgtgcagcctgttatgga
cgtgacttggcccgtggtcatatcatcaaccatggtgaggccatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgttactaacagcgacggcaaactggttatcgtttctcgttcttct
gagctggccatcatcgatgagttaggtcgtgagaaagagcgttacaaagtgccatacggt
actgtgcttgagaaattggaagaagctgcggttgaagcgggcgatattatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtcgatatg
attgacggtgtcactatgacacgtcaaacagacgaactaacgggtctatcatcaatcgtg
atccttgacgtcggtcagcgtggtacagcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtagcgatctgatgatccctggtacagaagtgccagcacagtacttc
ttacctggtagtgcgattgttaaccttgacgacaacgcgcaaattgccgtaggtgacgct
ttagcacgtattccacaggaatcgtctaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtaagccaaaagagcctgctattctggcagaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtcattacacctgct
gatggcggcgatcaatatgaagagatgatccctaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacatgacatt
ctgcgtctgcgcggtatccacaatgtagcaaactacattgtgaacgaagttcaagacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtcatcatccgtcaaatg
ctacgtaagtgcttgatcacttctgcgggtgacacagagttcttagaaggtgagcaagtt
gaagtgtctcgcgttaagatcgcaaaccgcgaacttatcgcacagggtaaagtacctgcg
accttcgaacgtgaactgctaggtattactaaagcgtctctggcaacagaatcgtttatc
tctgcagcgtcgttccaagaaactacgcgcgtactgactgaagccgccgtaggtggtaag
agtgatcaactacgtggtctgaaagaaaacgttatcgttggtcgtttgatcccagccggt
acaggttatgcttatcacaagacccgcaatgatgctcgcgctaagaaagacgagccagtt
gttgtgaataaagtcactgctagtgaagctgaacagaacctcgctgatctcttaaacatg
gccggtagccaagattaa
DBGET
integrated database retrieval system
