Shewanella putrefaciens 200: Sput200_1373
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Entry
Sput200_1373 CDS
T02015
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shp
Shewanella putrefaciens 200
Pathway
shp03030
DNA replication
shp03430
Mismatch repair
shp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sput200_1373
03430 Mismatch repair
Sput200_1373
03440 Homologous recombination
Sput200_1373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shp03032
]
Sput200_1373
03400 DNA repair and recombination proteins [BR:
shp03400
]
Sput200_1373
Enzymes [BR:
shp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sput200_1373
DNA replication proteins [BR:
shp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sput200_1373
DNA repair and recombination proteins [BR:
shp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sput200_1373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ADV53842
UniProt:
E6XR85
LinkDB
All DBs
Position
1549210..1552683
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHGA
GIKPIIGADFWMQVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEW
LLTYNEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFLELIRTGRPDEER
YLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDFLVDCSKKGL
EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGPHRASMMAT
LPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDIGEARSHFAK
ALEVDLDAEKLTPAVLDSIEQAMSPWRSGAVPVLINYSQTLAKGQFRLADSWRVNPSDEL
VFALESLLGPNKVRIVF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttttctatgtccgatggc
gtagccaaagttaaacctattcttgcccaagttgaggcgttaggtatggctgcggtcgcc
ttgacggatcaaaacaacttctgtggattagtaaagttttacagtggctgccatggtgcg
gggattaagcccattattggtgccgatttttggatgcaagtgcctgggtttgaaggtgaa
ttctgtgcgttaaccattatcgcaatgaacaacgtgggttatcaaaatctcactcaaatt
atcagccaagcctatttgcgggggcaggtggcgggtcgagtggtgatcgatcaagagtgg
ttactgacctataacgaaggcatattattgctttctggcgctaaggaaggtgatattggt
aaggcgttacttaaggggaataatacccaagttgaatccctttgtgagttttatcaaacc
catttcgctgaacgctactttttagagctaatccgcacgggtcgacccgatgaagagcgt
tatttgcatatggccgttgcgttggcgcaggaaaaaggcatccctgttgtggccaccaat
caggtcgtatttttaaaacccgaagatttcgacgcccacgaaattcgcgtggctatccat
gatggctttactcttgcggatccccgccgtcctaaaaagtacagtgagcagcaatactta
cgtagtgaagaggaaatgtgcgagctatttgctgacattcctgccgcactttctaatacg
gttgaaatcgctaaacgctgtaatgtgacaattcgtttatacgagtattttctgcctaac
ttccctacgggcgatatgtccatcgaagactttttggtggattgttcgaagaagggtctc
gaggagcgcctcgcgtttttatttcccgatccacaggttcgtgccgagcgccgcggcgaa
tacgatgagcgcctagatatcgaattgcaagtgatcaaccaaatgggtttccccggttac
ttcttgatcgtgatggagtttatccaatggggtaaggataatgggattcctgtagggccg
ggccgtgggtcgggcgcaggttcgcttgttgcctatgctcttaaaattactgacttagat
ccgcttgaatttgacttgctgttcgaacgattcctcaaccccgagcgggtttctatgccc
gactttgacgtcgacttctgtatggatagacgggacgaggtgatagaccatgtggccgag
ttatacggccgtgaagcggtgtcgcaaatcatcaccttcggtactatggccgcaaaagcg
gttattcgcgacgttggccgcgtactaggtcatccctatggttttgttgaccgtatttca
aaacttattccccctgagcctggaatgacactggctaaagcctttgaggtcgaacctgcg
ctgcaggagtcctacgacgccgatgaagatgttaaagatcttatcgacatgtgtcgtaaa
cttgagggcgtgactcgtaacgcaggtaagcatgcgggtggggtggtaattgcacccact
aaaattaccgattttgcaccactttattgtgatgcagagggtaaaaacccagtaacacaa
ttcgataaaaacgatgtggaaaccgcaggccttgtgaagtttgacttcttggggctacgt
accctcacgattgtcgattgggcgctggagatgatcaacaaagtggaggtcaaaaatggc
cgccctcctgtacgtatcgaggcaattcctttagacgatcctgcctcgtttcgattatta
cagcgttatgaaaccaccgctgtttttcagcttgaatcccgcggtatgaaggatttgatt
aagcgacttcaaccggattgcttcgaggatatgatcgcgcttgtcgccctgttccgtcct
gggcctttgcaatcgggcatggtggataactttatcgagcgtaagcatggccgcgaggaa
gtgtcttacccagattcccaataccagcacgaatccttaagggaattactctcacctacc
tatggcattatcttgtatcaagagcaggtcatgcagatagcgcaggtgctttctggctac
actctgggcggcgccgatatgcttcgccgtgccatgggtaagaaaaaacctgaagagatg
gctaaacagcgtagcatctttaaagagggtgcgattaaaaatggcgtcgacggtgagttg
tcgatgaaaatcttcgacttagtggaaaagttcgccggttatggttttaacaaatcccac
tccgccgcttatgccttggtttcctatcaaactttgtggttgaaaacccactatccttca
cagtttatggcggcggtgatgtccgcggatatggataacaccgacaagatagtgacactg
gttgatgagtgcgaacgcatggggctcactctgatcccgcccgatgtgaacaaagggcta
tttaaatttactgtcgatgatgatctgcgaattgtttatggtatcggtgccattaaaggt
gtgggtgagggccctgttgagtcgattttagaggcgcgtaaagatggcccctttgttgat
ttattcgatttctgtgcccgtatcgacctgaaaaaactcaataaacgtgtgattgaaaag
cttatctgcgcgggtgccttagattccctcggaccgcatcgcgcttcgatgatggcgacc
ttacccgaagcgatgcgcgccgccgatcaacatgccaaagcgcaggcaatcggtcagcac
gatatgtttggcctgctcaatagcgagccggaagatagcaaacaacagtttgtggaatgt
accccatggccagataaaatttggcttgagggagagcgtgaaactttagggttatattta
acaggtcaccctattaatcaatatcttaaagaacttaagtactatacttcagggcgctta
aaagatgtgcatcctactgaacgtggtaaaacggtaaaggccgcaggtttagttgtcgcg
actagggtgatgctgaccaaacgcggttcaaagatgggattgttgacactcgatgacaag
agtgcgcgcctcgaggtgatgttatttaccgaagcctttgagaaatttaatcacttgctc
gagaaagataggatccttatctgcgaaggtgaagtaagttttgatgattttgctggtggt
aatcggatgactgctcgcaatattattgatattggtgaggcgcgtagccattttgctaag
gcgcttgaagtcgaccttgatgccgagaagttaactcctgcggttttagacagtattgaa
caagccatgagcccttggcgaagtggtgctgtgccagtactcattaattacagtcaaact
ctggctaaaggacaatttagacttgctgatagttggcgagttaacccttctgatgaatta
gtcttcgcccttgaaagtttacttggcccaaataaagttaggatcgtgttttga
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