Shewanella putrefaciens 200: Sput200_1899
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Entry
Sput200_1899 CDS
T02015
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shp
Shewanella putrefaciens 200
Pathway
shp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sput200_1899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shp03400
]
Sput200_1899
Enzymes [BR:
shp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Sput200_1899
DNA repair and recombination proteins [BR:
shp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sput200_1899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADV54355
UniProt:
E6XKG7
LinkDB
All DBs
Position
complement(2146660..2150430)
Genome browser
AA seq
1256 aa
AA seq
DB search
MGEDRMLSTHTTTQTPTVQHQAEALNPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLG
DGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLPIEDPFVQALYDNTPVD
ERSIALRRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVR
DFWREACYPLPDYLAQVIAKEFGEPDGLIKQLRPLLGASQAQPLSPTANFTTLAQSLSQS
LERFKLAWPRGRDGLLELLHSLPLNGTRFGKATEHYPKLAAMFDALDNWLAYGNGLPPIK
VLEDLSLSELKLNKGGVIPSVSEAPLLDHMEQLAALIKAVKPAFLYSAKQGISARFAKQK
QQQNVLTPNDLLTTLADALNANRQTLPKAVASRFPVALIDEFQDTDPLQFAIFSSIYQPH
NAFNLPTDNHLNHAEKNLSLLMIGDPKQAIYAFRGADIYTYIEARKATEAHYHLDTNYRS
STNMVAGVNHLFSRHPDPFISQSIPFDSVKTPSSAKHKILTEPSENPAALRVRLLSETEN
GLNKTTARHRLANDAAAEITRLLTSAAHGECYTPNGPLMAKDIAILVRDRNEAAVMKAAL
SQRQIGAVFLSRDSVFDTLEAREMSLILRSLANPKDERALRSALATALLGYNAEQIHAFN
QNEEQRQQLLEQFFDLHTIWQKRGIMPALLSLANSTSLIERLLHAPQPKLDNNQEQETTY
GERRLTDFRHLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVT
IHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHKINQTHGQALVWDIEGTEEGWEQFRQE
TLAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGITDADCDFNRI
SQAAQNLAQSIDAISIDKIPEETSLQTLPSSHDATQTLAPKTIHRQYSTPWRVGSYSGLV
KNTSHGKAAPGADDEALSVLEQGVASRDQLKIDNSLDPKPFGLNRFNFERGANAGSFMHL
VLELIDFTKAEFDLPEQLPKAMLQYGIAAEWVDVLHAWYLDILKAPLALMPAEAEATTPL
INPNLCLATLSKQYTLVEMEFYLPLNALKDTQLNALLNQFGYRSTLKFDDLQGMLKGFID
LTFEYEGKFYIADYKSNHLGDDIYAYHQAALQGAIKEHHYDLQYILYSLALHRYLRLRLP
AYDYDTHIGGCYYLFLRGMSAQYPGYGIYYDKPPKALIYALDALFDNPFIDTGVTV
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagataggatgttgagtacacacacgacaacccaaacgccaacagtacaacat
caggctgaggcacttaacccactgacattgccctttggcggcagtcggctgatagaagcc
agcgcaggaacgggtaaaacctatactatttcaggtctttatctgcgtttactcctaggt
gatggcatcgatacccctttaacctgtgaacaaattttagtggtcacctttaccaatgcc
gcaactgaagaattaagggatcgtattcgtcgccgcattcaagtcgcctttaagtgtttt
ttaggcttgccgattgaggatccctttgtacaagcactttacgacaacacgcctgttgat
gaacgctcaattgcccttaggcgtttcgatttagcactaaaatccctcgacgaagccgcg
atttttactattcacggtttttgccagcgcattttgtcggatcttgcctttgaatcatcc
ctgcttttcgagtcagactttaccttagatgatagcgaattcctgcaccatgctgtgcgg
gatttttggcgtgaggcttgttatcccttaccagactacttagcccaagttatcgcaaaa
gagtttggcgagcccgacggtttaatcaaacaactgcgcccattactgggggcgagccaa
gcgcaaccgcttagcccaacagcaaactttaccaccttagcgcaatccctcagccagagt
ttagaacgcttcaagttagcttggccccgtggccgtgatggattactcgagttattgcat
agcctaccacttaatggcactcgatttggtaaagcaacggagcattaccctaaactcgcg
gcgatgttcgatgccttagataattggcttgcctatggaaatggtctaccgcccataaaa
gtattggaggatttatccctatcggaacttaagctcaataaaggcggcgtgatcccaagt
gtaagcgaagctccactgcttgatcatatggagcaattggcggcactcattaaagccgtt
aaacccgcgtttttgtatagtgctaaacaggggattagcgcgcgttttgcaaaacaaaaa
caacaacaaaatgtattgacgcccaatgacctactaaccaccttggccgatgcattaaat
gccaaccgtcagaccttacccaaagcggtagcaagtcggttccctgtggcattgattgat
gagtttcaggacacagatcccctgcaatttgctattttctcaagcatttatcaaccccat
aacgcattcaatttaccaactgataatcaccttaatcatgctgaaaaaaacctcagtcta
ttgatgattggcgatcctaaacaggcgatttatgcttttcgtggcgccgatatctatacc
tatatcgaggctcgcaaagccactgaagcccactaccacttagatacaaactaccgctca
agcaccaatatggtcgctggcgttaaccatttatttagccgacatcccgatccttttatc
agtcaatcgattccctttgacagcgtcaaaacccccagcagcgcgaagcataaaatctta
accgagccaagtgaaaatcccgctgcgctcagagtaagactgttaagtgaaaccgaaaat
ggcctaaataaaaccacggcaaggcatcgactcgctaacgatgctgcggcagaaatcacc
cgtttgttaacaagtgccgcccatggtgaatgctatactcctaacgggccattaatggct
aaagacattgccatattagtgcgtgatcgtaacgaagccgcggtaatgaaagcagcactc
agtcagcgccaaatcggtgccgtgtttttaagtcgcgacagtgtattcgatacccttgaa
gcgcgagaaatgtcgttgatcctacgctcactggcaaaccccaaagatgagcgcgcactg
cgaagcgccctcgccacggcattacttggttacaacgctgaacaaattcatgcatttaac
caaaatgaagagcagagacaacaactgttagaacagttttttgatttacacactatctgg
caaaaacgcggcatcatgccggcactgctcagtcttgccaatagtacgtcacttatcgaa
cgtttgctgcacgctcctcagcccaagttggataacaatcaagagcaagaaacaacatac
ggtgaacggcgcttgaccgactttcgtcatttagctgaactattacagcaaaaggccacg
gaactcgacgggataagtgccctactcaattggtatgaacaacaacttattgataataca
ggaacagatgaacaacagcttcgcctagaaagcgagcagaatttagtgcaaatcgtcact
atccataaaagtaagggactcgaataccccgtttgtttcgtgccctttgtcagtctggcg
cgggacaatcgccgtcgcccaacacctatgctttaccacaaaataaaccagactcatggg
caagcgttagtgtgggatattgaaggaacagaggaaggctgggagcagtttaggcaagaa
accttggccgaagatctccggctattgtatgtggcactcactcggcctgtgtatctgtgt
tacttgtatatcgctaaccacagccgtcaactcaaaaatggccttaaaagtcagctccat
gaaaccgctattggctatcttctggggatcaccgatgccgattgtgattttaaccgtatc
agccaagcagcacaaaatcttgcccaaagtattgatgcgattagcattgataaaatacca
gaagaaactagcctgcaaacattgccatcaagccatgatgcaacgcaaacactcgccccc
aaaacaatccatcgccagtacagtacaccttggcgagtcggcagttattctggtttagtg
aaaaataccagccacggtaaagccgcgcccggtgccgatgatgaagcgctcagcgtctta
gaacaaggtgttgcatcacgcgaccaacttaaaatcgataacagcttagatcctaagcca
tttgggcttaatcgctttaactttgagcgcggcgcaaacgcagggagttttatgcactta
gtgctcgagctaattgattttacaaaggcagagttcgatttacctgagcaacttcctaaa
gccatgctgcaatatggtatcgcagccgaatgggtagacgtcttgcatgcttggtatctt
gatatcctcaaggccccccttgcactgatgcccgctgaagccgaagcgacgactccactt
atcaatccaaatctgtgtttggcaacattatcaaaacaatataccttagttgaaatggag
ttttatttaccccttaacgcgctaaaagatacacagcttaatgcgttattgaatcagttt
ggttataggtcaacccttaaatttgatgatcttcaaggtatgctgaaaggttttattgac
ttaacctttgaatatgaaggtaaattttacattgctgactataaatccaaccatctcggt
gatgatatatatgcctaccatcaggcggctcttcagggagcaattaaagaacatcactat
gatttacagtacattctttattccctcgccctgcacagatacttacgattgcgcctgccc
gcatatgattatgacacccatatagggggttgttattatttgtttttaaggggaatgtct
gctcaatatcctggctatggtatttattatgataaaccgcctaaggcactgatctatgcg
ctggatgctttatttgataacccatttatcgacactggagttacggtatga
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