KEGG   Shewanella putrefaciens 200: Sput200_3407
Entry
Sput200_3407      CDS       T02015                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
shp  Shewanella putrefaciens 200
Pathway
shp02024  Quorum sensing
shp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sput200_3407
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Sput200_3407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shp03019]
    Sput200_3407
   03036 Chromosome and associated proteins [BR:shp03036]
    Sput200_3407
Messenger RNA biogenesis [BR:shp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Sput200_3407
Chromosome and associated proteins [BR:shp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Sput200_3407
SSDB
Motif
Pfam: Hfq LSM Hfq_1 Staphylcoagulse
Other DBs
NCBI-ProteinID: ADV55796
UniProt: E6XNH1
LinkDB
Position
complement(3871786..3872058)
AA seq 90 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNSIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVTGHQNAQGGYGPQDDVPSGE
NT seq 273 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccatttttgaacgcactacgccgcgagcgcgtt
cctgtatcaatttacttagtaaacagcattaaactccaaggacaggtagagtcgtttgat
caatttgtcattctgttgaaaaacacagtgagccaaatggtatacaagcacgctatttct
acggttgttcctgctcgcccattcaatgtcactggtcaccaaaatgcccagggtggatat
ggtccgcaagacgatgtacctagtggcgaataa

DBGET integrated database retrieval system