Shewanella putrefaciens 200: Sput200_3407
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Entry
Sput200_3407 CDS
T02015
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
shp
Shewanella putrefaciens 200
Pathway
shp02024
Quorum sensing
shp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sput200_3407
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sput200_3407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shp03019
]
Sput200_3407
03036 Chromosome and associated proteins [BR:
shp03036
]
Sput200_3407
Messenger RNA biogenesis [BR:
shp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Sput200_3407
Chromosome and associated proteins [BR:
shp03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
Sput200_3407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Staphylcoagulse
Motif
Other DBs
NCBI-ProteinID:
ADV55796
UniProt:
E6XNH1
LinkDB
All DBs
Position
complement(3871786..3872058)
Genome browser
AA seq
90 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNSIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVTGHQNAQGGYGPQDDVPSGE
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctttacaagacccatttttgaacgcactacgccgcgagcgcgtt
cctgtatcaatttacttagtaaacagcattaaactccaaggacaggtagagtcgtttgat
caatttgtcattctgttgaaaaacacagtgagccaaatggtatacaagcacgctatttct
acggttgttcctgctcgcccattcaatgtcactggtcaccaaaatgcccagggtggatat
ggtccgcaagacgatgtacctagtggcgaataa
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