Shewanella putrefaciens 200: Sput200_3643
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Entry
Sput200_3643 CDS
T02015
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
shp
Shewanella putrefaciens 200
Pathway
shp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sput200_3643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shp03021
]
Sput200_3643
03400 DNA repair and recombination proteins [BR:
shp03400
]
Sput200_3643
Enzymes [BR:
shp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sput200_3643
Transcription machinery [BR:
shp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sput200_3643
DNA repair and recombination proteins [BR:
shp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sput200_3643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
DUF1599
Motif
Other DBs
NCBI-ProteinID:
ADV56023
UniProt:
E6XQV7
LinkDB
All DBs
Position
4147125..4147403
Genome browser
AA seq
92 aa
AA seq
DB search
MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEMNDKPTVIALREIELGLVN
AHTLDADERQTVREREAAEIAAVAAIAEGRSL
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgtaactgtagaagacgccgtagaacaaatcggcaaccgttttgatatgatc
ctggttgcggcgcgtcgtgctcgccaaatcgccgtgcagggtaaagaccctatggttgaa
gagatgaacgacaagccaacggttatcgccctgcgtgaaatcgaattaggcttagttaac
gctcacaccctagatgctgatgagcgtcaaacggtgcgtgaacgtgaagctgctgaaatt
gcagcggttgcagccattgctgaaggccgttcattataa
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