Shigella sp. PAMC 28760: A0259_13885
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Entry
A0259_13885 CDS
T04390
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
shq
Shigella sp. PAMC 28760
Pathway
shq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
A0259_13885 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shq03400
]
A0259_13885 (sbcB)
Enzymes [BR:
shq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
A0259_13885 (sbcB)
DNA repair and recombination proteins [BR:
shq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
A0259_13885 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A0259_13885 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0259_13885 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AMR25370
LinkDB
All DBs
Position
2759130..2760554
Genome browser
AA seq
474 aa
AA seq
DB search
MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQP
GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY
DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLV
HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD
NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY
AEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacggtaagcaacaatctacctttttgtttcacgattacgaaacctttggaacg
caccccgcgttagatcgccctgcacagttcgcagccattcgcactgataacgaattcaat
gtcatcggcgaacccgaagtcttttactgcaagcccgcggatgactatttaccccagcct
ggagcagtattaattaccggtattaccccgcaggaagcacgggcgaaaggagaaaacgaa
gccgcgtttgccgcccgtattcactcgctttttaccgtaccgaagacctgtattctgggc
tacaacaatgtgcgtttcgacgatgaagtcacacgcaacgttttttatcgtaatttctac
gatccttacgcctggagctggcagcatgataactcgcgctgggatttactggatgttatg
cgtgcctgttatgccctgcgcccggaaggaataaactggcctgaaaatgatgacggtcta
ccgagctttcgccttgagcatttaaccaaagcgaatggtattgaacatagcaacgcccac
gatgcgatggctgatgtgtacgccactattgcgatggcgaaactggtaaaaacgcgtcag
ccacgcctgtttgattatctctttacccatcgtaataaacacaaactgatggcgttgatt
gatgttccgcagatgaaacccctggttcacgtttccggaatgtttggggcatggcgtggc
aataccagctgggtggcaccgctggcgtggcatcctgaaaatcgcaatgccgtaattatg
gtggatttggcaggagacatttcgccattactggaactggatagcgacacattgcgcgag
cgtttatataccgcaaaaaccgatcttggcgataacgccgccgttccggttaagctggtg
catatcaataaatgtccggtactggcccaggcgaatacgctacgcccggaagatgccgac
cgactgggaattaatcgtcagcattgcctcgataacctaaaaattctgcgtgaaaatccg
caagtgcgtgaaaaagtggtggcgatattcgcggaagccgaaccgtttacgccttcagat
aacgtggatgcacagctttataatggctttttcagtgacgccgatcgtgcagcaatgaaa
attgtgctggaaaccgagccgcgtaatttaccggcactggatatcacttttgttgataaa
cgaattgaaaaactgttgttcaattatcgagcgcgcaacttcccggggacgctggattat
gccgagcagcaacgctggcttgagcaccgccgccaggtcttcacgccagagtttttgcag
ggctacgctgatgaattgcagatgctggcacaacagtatgccgatgacaaagagaaagtg
gcgctgttaaaagcgctttggcagtacgcgcaagagattgtctaa
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