Sarcophilus harrisii (Tasmanian devil): 100913560
Help
Entry
100913560 CDS
T02286
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100913560
09123 Folding, sorting and degradation
03018 RNA degradation
100913560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100913560
03041 Spliceosome [BR:
shr03041
]
100913560
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100913560
mRNA cycle factors
Stress granule specific factors
100913560
Spliceosome [BR:
shr03041
]
Complex C
Other components
Complex C specific factors
100913560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_RDR6
RRM_occluded
DUF6262
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
100913560
NCBI-ProteinID:
XP_012409025
Ensembl:
ENSSHAG00000003431
UniProt:
G3VL41
LinkDB
All DBs
Position
X:complement(772240..774297)
Genome browser
AA seq
634 aa
AA seq
DB search
MHPSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFS
AFGNILSCKVVCDENGSKGYGFVHFETREAAERAIDKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFER
HEDAQKAVEEMNGKELNGKKIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYIALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQAQNRPAY
YPPGQIAPLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFGTMRPSSSQVPRAMSSRVS
NATSQSMGPRAAAGSASAGTPAVRSAPQYKYAAGVRNPQQHLNPPPQVTLQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKAVNSAPDVPPV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcaccccagcgcccccagctaccccacggcctcgctgtacgtgggggacctgcacccc
gaggtgagcgaggcgatgctgtacgagaagttcagcccggccgggcccatcctctccatc
cgcgtctgcagggacatgatcaccaggcgctccctgggctacgcctatgtcaacttccag
cagccggcggatgccgagagagccctggagaccatgaatttcgatgtcatcaagggcaag
ccggtgcgcatcatgtggtcccagagggacccctccctccgcaaaagcggcgtgggcaac
atcttcatcaaaaacctggacaagtccatcgacaacaaggctctgttcgataccttctcc
gccttcggcaacatcctgtcctgcaaggtggtgtgcgacgagaacggctccaagggctac
gggttcgtgcacttcgagacccgcgaggcggccgagagggccatcgacaagatgaacggc
atgctcctgaacgaccgcaaggtcttcgtgggccgctttaagtcccgcaaagagagggag
gccgagctgggggccagggccaaagagttcaccaacgtttacatcaagaacttcggggag
gacatggacgatctgaggctcaagaggctcttcggtaagttcgggcccgccctcagcgtc
aaagtcatgacggacgagagcggcacgtccaaaggcttcggcttcgtgaacttcgagagg
cacgaggacgcccagaaggccgtggaggagatgaacggcaaggagctgaacgggaagaag
atctacgtgggccgggctcagaaaaaggtcgagcgccagacggaactcaagcgcaagttc
gagcagatgaagcaggaccgcatcaccaggtaccagggggtgaacctgtacgtgaagaat
ctggacgacggcatcgacgacgagcgcctgcgcaaagagttctcccccttcgggaccatc
accagcgccaaggtgatgatggaagggggccgcagcaaaggcttcggcttcgtctgcttc
tcctcccccgaggaggccaccaaagccgtcacggagatgaacggccggatcgtggccacc
aagcccctgtacatagccttggcccagcgcaaagaggagcggcaggcccacctcacgaac
cagtacatgcagaggatggccagcgtccgggccgtgcccaaccccgtgatcaacccttac
cagcctccctcgggctacttcatggcggccatcccccaggcgcagaaccgccccgcctac
tatccccccggccagatcgcccctctcagacccagtccccggtggacggcccagggggcc
aggcctcatccgttccaaaacatgcccggggccatccggccggcggctcccaggcccccg
ttcgggaccatgaggccgtcttcctcgcaggtgccaagggccatgtcctcccgggtctcc
aacgccacctcgcagagcatgggcccccgcgcggccgcggggtccgcctccgcggggacc
ccagccgtgcgttcggcgccccagtacaagtacgccgctggcgtgcgcaatccccagcag
cacctgaacccgccgcctcaggtgaccctgcagcagcccgccgtccacgtgcagggtcag
gagccgctcacggcttccatgttggccgccgcccctccacaggagcagaagcagatgctg
ggagaacggctgttcccgctcatccaggccatgcacccgaccctggccggtaagatcact
ggcatgttgctggagatcgacaactcggagcttctccacatgctcgagtccccggagtct
ctgcggtccaaggtcgacgaagcggtggcggtgctgcaagctcaccaggcgaaagaggcc
gcccagaaagcggtcaacagtgctcccgacgtgcctcctgtctaa
DBGET
integrated database retrieval system
