Sarcophilus harrisii (Tasmanian devil): 100914020
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Entry
100914020 CDS
T02286
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013
Nucleocytoplasmic transport
shr03015
mRNA surveillance pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100914020
09122 Translation
03013 Nucleocytoplasmic transport
100914020
03015 mRNA surveillance pathway
100914020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100914020
03041 Spliceosome [BR:
shr03041
]
100914020
03009 Ribosome biogenesis [BR:
shr03009
]
100914020
03012 Translation factors [BR:
shr03012
]
100914020
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100914020
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100914020
mRNA cycle factors
Stress granule specific factors
100914020
Spliceosome [BR:
shr03041
]
Complex C
Other components
EJC/TREX
100914020
Ribosome biogenesis [BR:
shr03009
]
Eukaryotic type
90S particles
Helicases
100914020
Translation factors [BR:
shr03012
]
Eukaryotic type
Initiation factors
eIF-4
100914020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
100914020
NCBI-ProteinID:
XP_003762789
Ensembl:
ENSSHAG00000004638
UniProt:
G3VQ51
LinkDB
All DBs
Position
1:281578697..281599801
Genome browser
AA seq
449 aa
AA seq
DB search
MTAQRCGCFLRTFFGGLGVRARAVRCPSPSPFSGFPGSMAASGAMATSGSARKRLLKEED
MTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQS
QSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIG
GTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIY
DVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE
WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE
FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK
NDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcagcgctgcggctgttttttgcgcacgtttttcggaggtctcggcgtgcgc
gcgcgagcagttcgttgcccctccccctcccctttttccggctttccgggaagtatggct
gcctccggcgcgatggctacttcgggttctgcgcgaaagcgtttgctgaaggaggaagac
atgaccaaggtggaattcgagaccagcgaggaggtggatgtgacacccaccttcgacacg
atggggttgcgggaggacctcttgcgtggcatatacgcctacggttttgaaaaaccatcg
gctatccaacagcgtgctatcaaacaaataattaaaggaagagatgttattgcacagtct
caatctggtacaggcaaaacagcaacatttagcatttcagttctccaatgtttggatatt
caggtgcgagaaactcaggctttgatattagccccaaccagggaattagctgtccaaatt
caaaagggtctgcttgctctaggtgattacatgaatgtccagtgtcacgcctgtattggg
gggacaaatgttggtgaagatatcaggaaattggattatgggcagcatgttgttgctggt
acaccagggcgcgtatttgatatgattcgtcgcagaagtttaagaacccgtgctatcaag
atgttggttttggatgaagctgatgaaatgcttaataaaggattcaaggaacaaatttat
gatgtgtacagatacctgcctccagctactcaagtggttttaatcagtgctacattgcct
cacgaaatcttagaaatgaccaacaaattcatgactgatccaattcgcatcttggtaaaa
cgtgatgaattgactcttgaaggaatcaaacaattttttgtggcagtggaaagggaagaa
tggaaatttgatactttatgtgatctttatgatacattgaccatcactcaagcagtcatc
ttttgtaataccaagaggaaggtagactggctaactgaaaagatgagagaagccaacttc
actgtttcatcaatgcatggagacatgccccagaaagagagagaatctatcatgaaagaa
tttagatctggtgcaagccgagtactcatttctacagatgtttgggccagaggattagat
gttccccaagtctctctgataattaattatgacttacccaataacagagaattatatata
cacagaattgggagatctggtcgatatggccgaaaaggtgttgcaattaattttgtcaag
aatgatgatatccgtattctcagagatattgaacagtactattcaacacaaattgatgaa
atgcccatgaatgttgctgatcttatctga
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