Sarcophilus harrisii (Tasmanian devil): 100914389
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Entry
100914389 CDS
T02286
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100914389 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100914389 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100914389 (COL11A2)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100914389 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100914389
NCBI-ProteinID:
XP_012404405
Ensembl:
ENSSHAG00000005537
UniProt:
G3VT58
LinkDB
All DBs
Position
4:284236404..284271363
Genome browser
AA seq
1786 aa
AA seq
DB search
MQQRREQLRWSTDIFRSVHGNLKVGSCSGPQPPSNTASWLSGTGCPGCPVMERCSCCKRL
LLVLLVLGLSAPLPARAEAPPVDVLRALQFPLLPDGVQRVVGVCPADVAYRVTRPAQLSA
PTRQLFPGGFPADFSLLSVLRPNPGLHAPLLTLYSAQGVRQLGLELGRPPRFLYEDQTGR
PRLPALPTFRGISLADGKWHHIAVAVKDHSVTLIVDCKKRITRPLPRSAHPILDTRGVVI
FGARILDDEVFEGDIQQLLIIPGTKAAYDSCKQPQTQCKGSHVEKPQNQKHQGNHKPLSW
GVHRLHRPQNQEPQRQSPDSFYYDYEPPYYDVTTTGITPDYQDPSLGEEDGTQESNPLLL
PEEEQIDPEGPPNAGRFRAEEYGEGTTDPPPGPYDYTYGYGDDYREETELGPALSAETTH
SGPATHGVRGLKGEKGEPAVLEPGMLVEGPPGPEGPTGLTGPPGIQGNPGPVGDPGERGP
PGRAGLPGSDGTPGPPGTSLMLPFRFGSGGGDKGPVVAAQEIQAQAILQQARLALRGPPG
PMGYTGHPGPLGHPGSPGLKGESGDLGPQGPRGPQGLSGPPGKAGRRGRAGADGARGMPG
EPGIKGDRGFDGLPGLPGEKGHRGESGSQGLPGPPGEDGERGDDGEIGPRGLPGESGPRG
LLGPKGPPGIPGPMGVRGIDGSHGPKGNLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG
DKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRG
LKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPNGDPGPIGLVG
EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGANGEKGARGLSGKSGPRGERGPTGPRGQRG
SRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRG
EVGFQGKTGPPGPPGVVGSQGAAGESGPMGERGHPGPPGPPGEQGLTGPSGKEGTKGDPG
PPGAPGKDGPAGLRGFPGERGLPGTGGGGGLKGIEGPPGPPGPAGSPGERGVAGTGGPIG
PPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEIG
DAGQKGSKGNKGEHGPPGPPGPLGPLGQPGAAGVDGEPGARGPQGHFGAKGDEGTRGFNG
PPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPHGPNGADGPQGPPGGVGNQGPLG
EKGEPGESGSPGIPGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPTGDDGPKGNPGPVG
FPGDPGPPGEGGPRGQDGAKGDRGEDGEAGQPGSPGPTGENGPPGPPGKRGPAGTAGPEG
RQGEKGAKGEQGAVGAPGKTGPVGPAGAAGKPGPDGLRGIPGSVGQQGRPGATGLAGPPG
PVGPPGLPGLRGDPGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGALGQKGETGIPG
ASGPIGSGGPPGLPGPAGPKGAKGATGQAGPKGEKGIQGPPGHPGPPGEVIQPLPIQMPK
KSRRSVDASQLVQEDEAVKVGATPGASGGLEEIFGSLDSLRDEIEQMRRPAGTQESPART
CQDLRLCHPELPDGEYWVDPNQGCHRDAFRVFCNFTAGGETCVSPRDDVTQFSYVDSGGS
PVGVVQLTFLRLLSVSAHQDVSYPCAGGGRDGPLRLRGANEDDLSPETSPYVKEFRDGCQ
THQGRTLLEVRTPLLEQLPVLDASFSDLGTSSRRSGVMLGPVCFQG
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagaggagagagcagcttcgctggagcactgacatcttccgttcagtgcatggt
aatcttaaagttggaagttgcagcggtccccagcctccctccaacaccgcttcctggctc
tcgggaactgggtgtcccggctgtccagtcatggagcggtgcagctgctgtaaacgtctc
ctgttggtccttttggtgctggggctgagcgcacctctcccagcccgagcagaggctccc
cctgtggatgttctccgtgcccttcagtttcccttactcccggatggtgttcagagggtt
gttggtgtttgtccagctgatgtggcctatcgagtgacccggcctgcccaactcagcgcc
cctaccaggcaactgttcccaggtggattccctgctgatttctcactgctatctgtgctc
cggccaaatcccggtctccatgcccctttgttgactctgtacagtgcccaaggtgttcgg
cagttgggactagagcttggtcggcctcctagattcctgtatgaagatcaaactggtcgg
ccaagactccctgctttgcctactttccgaggcattagcttagctgatggcaagtggcac
catatagctgtggctgttaaggatcactctgtcaccctgattgttgactgtaagaagagg
atcacccggcctctgccaaggagtgctcatcctattctagacacccgtggagtcgtcatc
tttggtgctcgaatcctggatgatgaagtctttgagggtgatatccagcagctcctcatc
atccccggaaccaaggctgcctatgactcctgtaagcaaccacaaacacaatgtaaaggg
agccatgtggagaaaccccagaatcaaaagcaccaaggaaaccacaaacctctcagctgg
ggagtacacagacttcataggccccaaaaccaggaaccccagagacagtctcctgattct
ttctactatgattacgagcccccttattatgatgtaacgaccacaggaatcacccctgat
taccaggacccttccttaggtgaagaagatgggactcaagagtctaaccccctgctactc
cctgaagaggagcagatagaccccgagggtccccccaacgctggcaggtttcgagctgag
gaatatggagaggggaccacagatccccctccaggtccctatgattacacctatggctat
ggggatgattatcgagaggagacagagcttgggccagctctctctgctgagaccacccat
tcaggacctgctacccatggagtccgagggttgaagggagagaagggggaacccgctgtt
ctggaacctggaatgctagtagaggggccaccaggccctgaaggacctacaggattgact
ggtccccctggaattcagggaaatcctggtcctgtgggtgatcctggagaaaggggcccc
ccgggccgggcagggcttcctggatcagatgggactcccggtcctcctggaacatcactt
atgcttcctttccggtttggcagtggtggtggggacaagggtcctgtggttgctgctcag
gagattcaggcccaagctatcctgcagcaggctcggttggcactacggggtcctcctggc
cccatgggatatacgggtcaccctggacccctgggtcaccctgggagtcctggactgaag
ggagaatctggagacttaggccctcaggggccacggggtccccagggcctatcaggcccc
ccaggcaaagctggacgaaggggtcgtgctggagctgatggagcccgtgggatgccagga
gagcctgggataaagggtgaccgaggatttgatgggctcccaggtcttccaggagagaaa
ggacacaggggtgaaagtggatcccaaggtcttcctggtcccccaggggaggatggagag
aggggagatgatggagaaattggaccacgaggccttcctggcgaatccggtccccgaggt
ctcttgggtcccaaaggtcctcctggaatccctggccccatgggagtcagaggcattgat
ggatcccatggccccaaagggaacttgggtcctcagggagagcctggccctcctggacaa
cagggtacaccaggaacccagggtcttcctggacctcaaggtgccatcggcccccatgga
gacaagggtcctcaaggaaaaccaggacttccagggatgcctggctcagatggacctccg
ggtcatccaggaaaggagggtccaccaggaaccaaaggaaaccaaggtccatctggtcca
cagggtcctctaggataccctggaccccgaggtgtcaagggtgtggatggaattcggggc
ttgaagggtcataagggagagaagggggaagatggttttcctggtttcaaaggtgacatg
ggtgtgaaaggtgaccggggtgaggttggagtacctggttcaagaggagaagatggtcct
gaggggccaaagggaagaactggacccaatggagacccaggccccatagggcttgtggga
gaaaagggcaaactgggtgttcctggtctgcctggatacccaggacgtcagggacccaag
gggtcacttggattccctggatttcctggtgccaatggagagaaaggagcccgggggctg
tctgggaaatcaggtcctcgaggggaacgtggtcccacgggtccacgaggtcaacgagga
tctcgaggagccacagggaaatcaggagccaagggaacatcaggtggtgatggtccccat
ggtcctcctggagagaggggacttcctggacctcagggtcctaatggcttccctggtcct
aaagggcccccaggcccccctggtaaggatggacttcctggacaccctggccaacgagga
gaagtgggtttccaaggaaagacaggcccccctggacctccaggggtggtgggatctcag
ggagctgcaggagaatcaggacctatgggagaacgagggcatccaggccccccaggtccc
ccaggagagcagggcctgactgggccatctggcaaagaaggaactaagggagatcctggc
ccccctggagctcctggaaaggatggaccagccggtttgaggggtttccctggtgaaagg
ggcctcccaggcactggaggaggtggtggcctgaagggaattgaaggtccacctggtccc
ccaggccctgcgggctctcctggagaacggggtgtggcaggtacagggggacccattggt
cccccaggaagacctgggccccagggccccccaggtgctgctggagaaaaaggtgttccg
ggtgagaaaggtcctattggcccaactggccgagatggtgtccaagggcctgtggggcta
cctggtcctgctggccctcccggtgtggctggagaagatggagacaagggtgagattggt
gatgctggacagaagggcagcaaaggcaacaaaggtgaacatggccctcctggaccccct
ggaccactgggtcctctaggtcagcctggagcagcaggagtagatggagaacctggtgct
cggggacctcaaggacattttggagccaaaggggatgaaggaacaagaggatttaatggc
cctcctggacccattggccttcagggtttaccaggcccttcaggagagaaaggagagaca
ggagatgtgggacccatgggtccacctggcccaccaggaccccgaggccctcatggacct
aatggagcagatggtccacaaggccccccaggaggtgttggaaaccagggtcctcttgga
gaaaagggggaaccaggagagtcaggctctccggggatccctggagaacctggagtcaag
ggccctagaggagaacggggagagaaaggagagtcaggacaaccaggggaagctgggcca
cctggacctaagggccccacgggtgatgatggcccaaaaggaaaccctggccctgttggt
tttcctggtgatcctggtcctcccggagaagggggtccccgaggtcaggatggtgctaaa
ggtgatcgaggagaggatggagaagctggacagcctggatccccaggtcctactggagag
aatggtccccctggacctcctggcaagaggggtcctgcaggtacagctggccctgagggg
cgacaaggagagaagggagccaagggggagcaaggtgctgttggtgctcctgggaagaca
ggaccagtgggtccagctggagccgcaggaaaaccaggccctgatggtctgaggggaatc
cctggttcagtgggacaacagggacgacctggagccactggactggccgggcctccaggt
cctgtgggacctcctggacttcctggtctcagaggtgatcctggagccaaaggagaaaaa
ggtcaccctggtctcattggcctcatcggccctcctggagaacaaggggaaaagggtgat
cgaggactccccggtccccaaggtgcacttggacaaaaaggagagacaggtatacctgga
gcatctggcccaattggctctggaggaccccctggtcttcctggacctgctggccccaaa
ggtgccaaaggagctacgggtcaagctggacctaagggagaaaaaggcattcaaggtcca
cctggacatccaggtcctcctggggaagtgatacagccattgcccatccagatgcccaag
aagtctcggcgttcagtagatgcgagtcagttggtgcaggaggatgaggctgttaaggtt
ggggccacccctggagcctctgggggtctggaagagatatttggctccctggattccctc
cgggatgaaattgaacaaatgaggcgccctgcaggaactcaggagagcccagctcgaact
tgtcaggacctgagactgtgtcaccctgagcttcctgatggtgaatactgggttgaccct
aaccaaggatgtcacagggatgcttttcgtgttttctgtaacttcacggcaggaggagag
acctgtgtgtcacctagggatgatgtcacacagttctcatatgtggactctgggggatct
ccagtgggtgtcgtccagctcacattcttgcgcctgctcagcgtatctgctcaccaggat
gtctcctacccgtgtgcaggaggaggtcgggatgggcccctccgcctccggggagccaat
gaggatgacctgagcccagagactagtccctatgttaaagaattcagagatggctgccag
acacatcagggccgtacattgctcgaagttcggacgcccctactggagcaacttcctgta
ttggatgcttccttctcggacttggggacctcgtctaggcggagtggagtcatgctgggg
cccgtctgtttccagggctag
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integrated database retrieval system
