Sarcophilus harrisii (Tasmanian devil): 100915177
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Entry
100915177 CDS
T02286
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X2
KO
K19719
collagen type II alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04974
Protein digestion and absorption
shr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100915177 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100915177 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100915177 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100915177 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100915177 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100915177 (COL2A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100915177 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100915177
NCBI-ProteinID:
XP_003772190
Ensembl:
ENSSHAG00000004561
UniProt:
G3VPV7
LinkDB
All DBs
Position
5:95329851..95377260
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AA seq
1490 aa
AA seq
DB search
MFHLRGPRTLLLLATAQALLIAAVQCQDVDIQNANSCVHGGQRYNDKDVWKPEPCRICVC
DTGTVLCDEVICEDIKDCLHPEISFGECCPTCPNDPSTASGHLGPKGQKGEPGDIKDVVG
PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGVSG
PMGPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG
AKGEAGAPGVKGEGGSPGENGSPGPMGPRGLPGERGRNGPPGAAGARGNDGQPGPAGPPG
PVGPSGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGADGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEHGPKGETGPAG
PQGPPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG
LGGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPAGPAGERGEQG
APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG
ARGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPAGPNGEKGESGPPGPAGTAGARGAPGERGETGPPGPAGFAG
PPGADGQPGAKGEQGESGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGANGNPGPPGPPGASGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKG
EPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRG
PPGPVGPPGLTGPSGEPGREGTPGADGPPGRDGAAGVKGDRGETGPVGGPGAPGPPGSPG
PVGPTGKQGDRGESGAQGPMGPAGPAGARGIPGPQGPRGDKGETGEAGERGLKGHRGFTG
LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDA
TLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNM
ETGETCVYPNPSSVPKKNWWSSKGKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYSVLKDG
CTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGRADQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacctgcgaggtccaaggactcttctgcttctggccactgcccaagcgctgctg
atagctgctgtccagtgtcaggacgtggatatccaaaatgcaaacagctgtgttcatgga
gggcagaggtataatgataaggatgtatggaaacctgagccttgcagaatctgtgtgtgt
gacactgggactgtcctgtgcgatgaagtaatctgtgaagacataaaagactgtctccac
cctgagatctcctttggagagtgctgccctacctgcccaaatgacccatccaccgccagt
gggcatctgggaccaaagggacagaaaggcgagcctggagatattaaagatgttgtagga
cccaaaggaccccctggacctcagggacctgcaggcgaacaaggacctcgaggtgaccgt
ggtgacaaaggggaaaagggtgctcctggacctcgtggtagagatggtgaacctggtacc
cctggtaatcctggaccccctggtcctccaggacctcctggaccccctggccttggtgga
aatttcgctgctcagatggcaggagggtttgatgaaaaggctggaggtgctcagatggga
gtgatgcaaggaccaatgggccccatgggaccaagaggaccgcctggcccttctggggca
cctggccctcaaggatttcaaggcaatcctggtgagccaggagaacctggagtctcgggc
cccatgggtcctcgaggtcctcctggtccccctggaaaacctggtgatgatggtgaagct
ggaaaaccaggaaaatctggtgaacgtggtcccccaggtcctcagggagctcgaggtttc
ccaggtactcctggtcttcctggtgtcaaaggtcatagaggttacccaggtttagatgga
gccaagggggaagctggtgctcctggtgttaagggtgaaggtggatctcctggtgaaaat
ggttctcctggccctatgggtccccgaggtctacctggtgagagaggacgaaatggccct
cctggtgcagcgggtgctcgtggcaatgatggtcaaccaggtccagctggtccccctggt
cctgttggtccttctggtggcccaggattcccaggtgctccaggggctaagggagaagct
ggtcctactggtgcccgtggtcctgaaggtgctcaaggtcctagaggtgaatctggtact
cctgggtctcctggacctgcaggagcttctggtaaccctggagctgatggcatccctgga
gccaaaggatctgctggtgctcctggaattgctggtgccccaggcttccctggtcctcgt
ggtcctcctggtccccaaggtgcaactggccctctaggtcctaaaggtcaaacgggagaa
cctggaattgctggcttcaaaggagaacatggacccaaaggagaaactggccctgctgga
ccccagggacctcctggtccagctggtgaagaaggcaagagaggtgcccgtggagagcct
ggtgctgctggacctgtgggtcctcctggagagagaggtgctcctggcaaccgtggtttc
ccaggtcaagatggtctggcaggtcccaagggagcccctggtgagcgtggacccagtggt
cttggtggtcccaaaggagccaatggtgatcctggccgtcctggagaacccggtctccct
ggagctagaggtctgactggtcgccctggtgatgctggccctcaagggaaagttggtcct
tctggagcccctggtgaggatggtcgccctggacctccaggacctcagggggctcgtggg
cagcctggtgtcatgggattccctggtcctaaaggtgccaatggagaagctggcaaggct
ggtgagaaaggactacctggtgctcctggactaaggggtcttcctggcaaagatggtgaa
acaggtgcctccggaccccctggaccagcgggtcctgctggtgaaaggggtgagcaaggt
gctcctggaccatctggcttccagggactacctggtcctcctggccctccaggtgaaggt
ggaaaaccaggtgatcagggtgttccgggtgaagctggtgctcctggtcttgtaggcccc
agaggtgaacgtggtttcccaggtgaacgtggctctcctggtgctcaaggtctgcagggt
gcccggggtctccctggaactcctggcactgatggtcctaaaggtgctactggtccagct
ggtcctaatggtgctcaaggtcccccaggcctgcaaggaatgcccggtgagagaggtgca
gctggtattgctgggccaaagggagacagaggtgatgttggtgaaaaaggccctgaagga
gctcctggaaaagatggtggcagaggtctgactggtcctattggcccccctggccctgct
ggccccaatggtgagaagggtgaatctggcccccctggtcctgctggaactgctggagcc
cgtggtgccccaggtgaacgtggagagactggaccccctggccctgctggatttgcaggt
cctcctggtgctgatggtcagcctggtgctaagggtgaacaaggagaatctggtcagaag
ggagatgctggtgcccctggtcctcagggtccatctggagcacctgggcctcagggtcca
actggagtgactggtcctaaaggagcccgtggtgcccagggtcctcctggagccactgga
ttcccaggagctgctggccgtgttggacccccaggtgccaatggtaatcctggtccccct
ggtcctcctggagcttctggaaaagatggtcccaaaggtgcaaggggagacagtggtcct
ccaggtcgtgctggggatcctgggcttcaaggtcctgctggagcacctggagagaaggga
gagccaggagatgatggtccctctggtcctgatggtcctccaggtccccaaggtcttgct
ggccaaagaggaattgttggattgcctggtcaacgtggtgaaagaggtttccctggtctt
cctggtccttcaggcgagcctggcaagcaaggagctcctggaagttctggagatcgtggt
cctcctggtcctgtggggcctcctggcttgactggtccttctggtgaacctggccgtgag
ggaacccctggtgctgatgggcctccaggcagagatggtgcagcaggagtcaagggtgat
cgtggtgaaacaggtcctgttggtggtcctggtgcccctgggccccctggctctcctgga
cccgttggaccaacaggcaaacaaggagacagaggagaatctggtgcacaaggacccatg
ggtcccgcaggaccagctggagcaaggggaatcccaggtcctcaaggtccccgtggtgac
aaaggagaaactggagaggctggtgagagaggactgaaaggacaccgtggtttcactgga
cttcaaggtctccctggtcctcctggcccttctggagatcaaggtgcttctggtcctgct
ggtccttctggtccccgaggtccacctggtccagtgggtccttctggcaaagatggctcc
aatggaatccctggccccattggtcctcctggtcctcgaggtcgctctggtgaaactggc
cctgctggtcctcctggcaatcctggaccccctggacctccaggtccccctggccctggc
atcgacatgtctgcctttgctggcttaggccagagagagaaaggccctgaccccctgcaa
tacatgcgagcagatgaagcagctggcaacctgcggcaacatgatgctgaggtagatgcc
accctcaagtccctcaacaaccagattgaaagcatccgcagcccagagggctctcgcaag
aacccagctcgtacctgccgagacctaaaactctgtcaccctgagtggaagagcggagac
tactggattgaccccaaccaaggctgcactttggatgctatgaaagtattctgtaacatg
gagactggtgagacatgtgtctatcccaatccatccagtgtccccaagaagaactggtgg
agtagcaagggcaaggaaaagaagcacatctggtttggagaaaccatcaatgggggcttc
catttcagctatggagatgacaatctggctcccaacactgccaacatccagatgaccttt
ttacgcttgttgtccactgagggttcccagaacatcacctaccactgtaagaacagtatt
gcctacttggatgaggcagctggtaacctcaagaaagccttgctgattcagggctctaat
gatgttgagatccgggctgagggcaacagcagattcacatacagtgtactgaaggatggc
tgcacgaaacacactggtaagtggggtaaaacagtcatcgagtaccgatcacagaagacc
tcccgtctccccatcattgacattgcacctatggacattgggagggctgatcaggaattt
ggtgtggacatcggccccgtctgcttcttgtaa
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integrated database retrieval system
