Sarcophilus harrisii (Tasmanian devil): 100915207
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Entry
100915207 CDS
T02286
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100915207 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100915207 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100915207 (COL27A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100915207 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100915207
NCBI-ProteinID:
XP_023350018
Ensembl:
ENSSHAG00000014768
UniProt:
G3WPM4
LinkDB
All DBs
Position
2:complement(477004214..477246075)
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AA seq
1903 aa
AA seq
DB search
MEPESDRVSRVRAAASRGGFLLAWIAFCSTCGLAITQGDPEDVDVLQRLGLGGKKLPGGR
APGLAPIPPGVIPFQSGFIFTQRARIEALTGAIIPTTFGTDLTLVLSLCSHRVNNAFLFA
VRSRRKKLQLGLQFIPGKIVLFLGQRRSLAFSYDVHDGRWHHLAISLRGQGATLLTSCGK
HRVPMDLHFKKEDSLDPEGSFLFGKMNQHSVQFEGAVCQFNIYPSAKAAHNYCKYLRKQC
RQADTYRPLLPPLLPLLPQDSEAHTHLGLQPSTSLQSLRNLTTAMPSLAPLRMAKTTPAL
PRAPGQGARATWVPSAPAGLGAPPHPPVRTSAADPRASRSPTVGTLVWTLPATAKPLPFS
SGKASSPGLRPALITPQSNLTKSPVRAMKPMPPSKASVVKTPLVPSKPVTPSVTVVPAKR
PHPLVKPVLTSPAKKPVPSGSQPGSAKAPLPPTAKPARQNPGTAKAPPSTAKPVLPAGRS
SLPVTPMTASQAARANVAKNLPFTSKPAKLTHPSIKSSLPASGPSLTQTPRPPAKPVLPT
AGIKLSRTIPPTFSPGSPPGLNSTGDRKVVEPAVKKELTPKSTPQPPSHPSPRRTGAVPS
TVSFPSGLKNLTTWPSPKQAQLSRTAAPVLPQHPASSSRFVGAVTLTHTDGYLFFDPIGP
TLFPLLLGPPGQKGDPGLPGPPGLPGLPGISGRRGPRGPPGPHGNPGPPGSPGAKGQKGD
PGLSPGKAYDGDKGDVGLPGLTGIPGPTGRKGLKGYPGPPGHPGDQGEPGPEGSLGAKGY
PGRQGLPGPIGEPGPKGSRGYIGLPGLFGLPGLDGERGPPGAHGKRGKMGRPGFPGDFGE
RGPPGLDGNPGELGAPGPPGVHGLIGDMGAIGPIGYPGPKGMKGLMGNIGEHGLKGDKGE
QGLPGVPGDIGFQGDKGSQGISGLPGARGKPGPTGKVGDKGPVGFPGPPGPEGFPGDIGP
PGQNGPEGAKGKPGARGLPGPRGQLGQEGDEGPTGPPGSPGLEGQPGRKGFPGRPGPDGP
KGEPGNSGRPGRMGEQGLMGFIGLVGEPGIVGEKGSRGAMGPPGAPGAKGSMGHPGSAGG
VGDPGDPGPPGPPGPRGPLGMRGTKGRRGPRGPDGPAGEPGSKGVKGPPGTQGKQGLDGQ
QGQEGERGELGPRGFPGIPGPSGPPGAKGVPGEAGPQGPQGLIGPLGEIGPKGPPGALGE
PGLPGEAGMKGDFGPLGIPGEQGLVGQRGETGLEGDSGPAGPDGLKGDKGEPGPDGERGE
KGKEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKGRTGPKGAKGYQGHLGEMGVPGEAGP
AGNQGPKGSRGTLGPTGAPGRMGAQGEPGLPGYDGHKGLSGPIGPPGPKGEKGEQGDDGK
IEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGFEGSRGKAGQQGLPGHPGPRGRPGPKG
SKGEEGQKGKQGKRGEAGSRGMQGLVGQPGPRGVVGRQGQEGPPGQDGIPGKDGRAGHQG
EQGDDGEVGPIGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPTGKRGTEGGTGFPG
SQGEPGSKGQPGDFGEMGFPGIAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGVIGPLG
ILGPSGIPGPKGNKGSRGDLGLQGPRGPPGPRGRPGPPGPPGIPISFQQDDLGAAFQTWM
NSNSALRTEGYSHSDLLVLDQGGEIFKTLHYLSSLIQSIKKPLGTKETPARICRDLMNCE
QKMADGTYWIDPNLGCASDTIEVTCNFTKGGQTCLRPITASKVDFAIGRVQMNFLHLLSS
EVIQHITIHCLNMSVWQEGTGKVSPKQAVRFRAWNGQIFEAGGQFEPEVSSDDCKVQDGR
WHQTLFIFRTQDPHQLPIVSVYNLPPATPGRQYRLEVGPACFL
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatccgaccgggtctccagagtcagagcagctgcgtccagggggggattc
ctcctagcctggattgccttctgctctacctgtggcctggccatcacccaaggagatcct
gaagatgtggatgtcctgcaacggctgggcctcggggggaagaagttgcccggcggccgg
gccccagggctggcccccatccccccaggagtcatcccgttccagtcggggttcatcttc
acccagcgggcccggattgaagcccttacaggcgccatcattcccaccaccttcggcact
gacctgaccctggtgctgagcctgtgctcccaccgagtcaacaacgccttcctctttgct
gtccggagccgcaggaagaagctgcagctggggctccagttcatccctggcaagatcgtg
ctgttcctgggccagcggcgctccctggccttcagctacgacgtgcatgacgggcgatgg
caccacttggccatcagtctccgaggccagggggccaccctcctcacctcctgcgggaag
caccgcgtgcccatggatctgcattttaagaaagaggactctcttgatcccgaggggtct
ttcctctttgggaagatgaatcagcactcagtccaatttgagggcgccgtatgccagttc
aatatttatccttctgccaaggcagctcacaattattgtaaatatctgaggaagcagtgc
agacaggccgacacctaccggccactgctgccccctcttcttcccctccttccccaggac
tccgaggcccatacccatcttggcctccagcccagcacctctctgcagagcctgaggaat
ctgaccactgcgatgccttcgctggcaccccttagaatggccaagaccaccccggccttg
cccagagcccccggccaaggtgccagggctacatgggtgccctcagcaccggccgggctt
ggggcacccccccacccgcctgtgaggactagtgccgcggatccccgggcgtcccgatcc
cccacagtgggtactttggtctggaccctaccagcaactgcaaagccattgcctttctct
tcaggcaaagcttcctcacctgggctcaggcctgcactgatcacccctcagagcaacttg
accaaatctcccgttcgcgccatgaagcccatgcccccatccaaggccagtgtggttaaa
actccccttgttcccagtaagccagtaactccttcagtcactgtggtcccagctaagagg
ccccatcccctggtcaagccggtgctgacctcccctgctaagaagccagtgccctctggc
tctcagcctggctctgccaaagccccccttcctcccacagcgaaaccagcccgtcagaac
cctggaacagccaaagctcctccttccactgccaagccagtgcttcccgccgggcggtcc
tcccttcccgttacccccatgacagcgtcccaggctgctcgggccaacgtggccaaaaac
ctcccctttaccagcaagccggccaagctgacccacccttccattaagtcatccttgcca
gcctcaggtccgagcctaacccagacccctcggcccccagcaaagccggtgcttcctacc
gcggggatcaaattgtccagaacaatccctcccaccttctccccaggctctcctcctggg
ctcaactccactggtgacagaaaagtggttgagcccgctgtgaagaaggaattgactcca
aagagcaccccccagccacccagccatcccagccctaggaggactggagcagtccctagt
accgtctccttcccttcaggcctgaagaacctgaccacgtggcccagccccaaacaggct
cagctcagccgtacagctgccccggttctcccacagcacccagcctccagctcccgtttt
gtgggcgccgtcactctcactcacacagatggatacctgttctttgatccaattgggccc
accttgttcccactgctgttgggccctccagggcagaagggagaccctggcctcccgggc
ccccctggcttgcctgggttgcctggaatatcaggcagaagaggaccccggggtccccct
gggcctcatggaaaccctgggcctcctggctctcctggtgcaaagggacaaaaaggagat
cctgggctttcccctggaaaggcctatgatggtgacaagggagacgtaggcttaccagga
ctgactgggattccgggaccaactggccggaaggggctgaaaggctatcctggaccacct
gggcatcctggagaccagggagagccaggaccagaagggagtctgggagccaaaggttat
cctggcaggcagggattacctgggccaataggagaacctggacccaaaggcagtcggggg
tatattggtctccccgggctctttggcctgccaggacttgatggagaaagggggcctcct
ggagctcatggcaagaggggcaagatgggtaggccgggatttcctggtgactttggggaa
agagggccccccggattggatggcaaccccggagagctgggtgccccaggcccacctgga
gttcatggacttatcggtgacatgggagctattggtccaattggctacccagggcccaag
ggaatgaaggggcttatgggaaacatcggagaacacggactgaaaggtgataagggcgag
caagggctgcctggtgtgcctggagatatcggattccaaggagataaggggagtcaggga
atatcagggttaccgggtgctcgaggaaagccaggtcctacaggcaaggttggtgacaaa
ggaccagttgggtttcctgggcctccaggtcctgagggattcccaggggacataggacca
ccaggccagaatggtccagaaggtgcgaagggcaagccaggagcccgaggcttaccagga
ccgagaggacagcttgggcaggagggagatgagggaccaacgggaccaccaggatcccct
ggcttagagggtcaacctggccggaaaggatttccaggaaggcccggccctgatggcccc
aagggtgagccaggaaactcgggtcggcctggaagaatgggtgagcagggcctgatggga
tttatcggtctggtcggggagccaggaatcgttggagagaagggtagccgaggtgctatg
ggaccaccaggtgctcctggagccaaggggtcgatgggtcatcctggttcagcaggtgga
gttggagatcctggagaccccgggcccccaggacctcctggacctcgtgggccactgggg
atgcgaggaacaaaaggacgtcgggggccccgaggaccagatggaccagcaggggagcca
gggtcaaaaggtgtcaagggccctccaggaacacagggcaaacagggcctggatggacag
cagggccaggaaggcgagagaggggagctggggcctcgtggcttcccgggaatcccgggt
ccttccggccccccgggggctaagggcgttccaggagaagcaggccctcaaggaccacag
ggactgattggcccattgggagagattggacctaagggaccccctggtgctttgggagag
cctggccttccaggtgaagctgggatgaagggcgattttggacctttgggcatccctgga
gagcaaggtctggttggccagcggggagagacagggctggaaggagatagtggcccagct
ggacctgatggtttgaagggagacaagggtgagccaggcccagatggcgagcgaggagag
aaaggcaaagaaggtctgaagggcaaagaaggtccccctggctatcctgggatcacaggt
gtccggggtccagaaggaaaaccaggcaaacaaggcgagaagggacgaaccggacctaag
ggtgccaagggctaccaagggcatcttggtgagatgggtgttccaggagaggccgggcca
gctggcaaccaaggcccaaaaggatcccgagggaccctgggaccaacgggtgctccagga
agaatgggagctcaaggagaacctggattgcctggttatgatggacataaaggactatca
ggacccattggacctcccgggccaaaaggcgagaagggagaacagggtgatgatgggaag
attgagggccctccagggcctcctggagatcggggtccagtgggtgatcgtggagaccga
ggggagcctggagatcctggataccctggccaggagggttttgaaggaagcagaggaaaa
gctggtcagcaaggcttaccgggacatcctggaccccggggacgaccaggacccaaagga
tcaaagggtgaagagggtcagaaagggaaacaaggaaagcgtggagaagctggcagtcga
ggaatgcagggcctggtggggcagccagggcctcgaggtgtggtaggaagacaaggccaa
gaaggacccccaggtcaggatggaattcctgggaaggatggtcgagctggacatcagggg
gaacaaggagatgatggagaagttggacccattggccctgcaggaaggagaggaaatcca
ggtgtggctggtttgcctggagctcagggacccccaggattcaagggtgaaagtgggttg
cctggacaactgggccctactggcaagcgagggacagagggaggaacagggttccctggg
agccaaggggagccaggatccaaaggccagccgggtgactttggagaaatgggctttcct
gggattgctggcctctttggacccaagggccctccaggagatattggtttcaaaggaatc
caggggccccggggaccaccaggtttaatgggaaaagaaggtgtcattggccccttgggg
atcctaggaccgtctggaattccgggtccaaaagggaacaaaggaagccgaggagatttg
ggattgcaaggcccaaggggtcctcctggccccagaggacgtcctggcccaccgggccct
cctgggatccccatctcatttcagcaagatgacctcggagcagcttttcagacgtggatg
aactccaacagtgcacttaggacagagggctactcccattcagacctcctagtgttggac
cagggtggggagatctttaagaccttacactacctcagcagcctcatccagagcatcaag
aagcctctaggaaccaaggagaccccagcccgtatctgtcgggaccttatgaactgtgag
cagaagatggccgatggtacatattggatcgacccaaatcttggctgtgcttcagacacc
atcgaagtcacctgcaattttactaaaggtggacagacatgtctcaggcccatcactgct
tcaaaggtggactttgccattggccgggtccagatgaattttcttcacctgctgagctcg
gaggtgatccagcacatcactatccactgcctcaacatgtctgtatggcaggaggggaca
ggcaaggtgtcccccaaacaagccgtgcgcttccgagcctggaatgggcagatctttgaa
gcgggcggccagtttgagccagaggtgtcctcagatgattgcaaggttcaggatggccgc
tggcaccagaccctgttcattttccggacccaagaccctcaccagctgcccatcgtcagc
gtctacaacctccctccagccacccctgggaggcaataccgcctggaagttggacctgcg
tgcttcctctga
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integrated database retrieval system
