Sarcophilus harrisii (Tasmanian devil): 100915374
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Entry
100915374 CDS
T02286
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04140
Autophagy - animal
shr04148
Efferocytosis
shr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100915374 (VPS39)
04148 Efferocytosis
100915374 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100915374 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100915374 (VPS39)
Membrane trafficking [BR:
shr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100915374 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
zf-FCS
Lgl_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
100915374
NCBI-ProteinID:
XP_003756083
Ensembl:
ENSSHAG00000005115
UniProt:
G3VRQ8
LinkDB
All DBs
Position
2:complement(263583306..263645481)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDIGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCKNSICVGFKRDYYLIRVD
GKGSTKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGNCTQKCALNWTDIPISME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSDIVYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTEYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRNQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLQTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSIWVLRDFPEDGLKIFTEDLPEVEALPRDRVLNFLIENFKGLAIPYLEHIIHTW
EETGSEFHNCLIRLYCEKVQGLMKEYLSSFPTDKTPVPAGNEEGELGEYRQKLLMFLEIS
SCYDPSQLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINEIRIFLEKVLEENAQKKRFNQVLKNLLQAEFLRVQEERIFHQQVKCIITEEKL
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPTDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgctttcgagcctgtgccgatcctggagaagctgccgctgcagatcgactgt
ctggcggcctgggaggaatggcttcttgtgggaaccaagcaaggtcatctccttctctat
agaattcggaaggatattggttgcaatagatttgaagtgactctagaaaaatccaacaag
aacttctccaaaaagattcaacagatccacgtggtttcccagtttaagattctggtcagt
ttgttagaaaataatatttatgttcatgacctgttgacatttcaacaaattactactgtt
tcaaaagcaaaaggggcatctctgtttacctgtgacctccagcacactgaaacaggggag
gaggtgcttcggatgtgtgtggctgtgaagaagaaactccagctctatttctggaaggat
agagagtttcacgaactgcagggggactttagtgtaccagatgtacccaagtccatggca
tggtgtaaaaattccatttgcgtgggattcaagagagactactatctaataagggtcgat
ggaaaagggtccaccaaagagctctttccaacaggaaaacaactggagcctttggtggca
cccctggcagatggaaaagtagctgttggtcaagatgatctcactgtggtgctgaatgag
gagggcaactgtactcagaagtgtgccctgaattggacagatataccaatttccatggag
caccaacctccatatatcatcgcggtgttgcctcgatatgtggagatccgaacgtttgag
cctcggctgctggtgcagagcattgagttacagagaccccgcttcattacctcaggaggt
tcagacatcgtctacgtggccagcaaccatttcgtctggcggctcatccctgtctctata
gcgacccaaatccagcagcttctccaggacaagcagtttgaactggccctgcagctggcg
gaaatgaaagatgattctgacagtgagaagcgacagcagatccatcacattaagaacctg
tttgcttttaacctcttctgtcagaaacgtttcgatgagtccatgcaagtctttgcaaaa
cttggcacagatcctacccatgtgatgggtttgtatcctgatctgctgcccactgaatac
aggaagcagctacaatatcccaacccgttaccagtactctctggggctgaactggagaag
gctcatttggctctaattgattatctgactcagaaaagaaaccagctggtgaagaagctc
aatgactctgaccatcagtcgagcacctcccccctaatggaaggtacccccacaatcaag
tccaaaaaaaagcttctgcagatcatagacaccaccctgctcaagtgctacctccagaca
aatgtggccttggtggctcctttgctgcgtctggagaacaatcattgccacattgaagaa
agtgaacatgtgttgaagaaggctcataagtacagtgaactgatcatcctctatgagaag
aaggggcttcatgagaaagctttgcaggtgctggtggaccagtctaagaaagccaactcc
cctctgaaaggccatgagagaacagtgcaatatcttcagcatctgggcacagagaacttg
catttggtgttttcctattctatctgggtgctgagggacttcccagaagatgggctaaaa
atatttactgaagatctccccgaagtggaggctctaccacgagaccgtgtgctgaacttc
ttaatagaaaactttaagggcttggctattccctatttggaacacattatccatacctgg
gaagagacaggttctgagttccacaactgccttatccggctgtactgtgagaaggtccaa
ggactgatgaaggaatacctcagctctttccctacagataagactccagttcctgctggt
aacgaggagggggagctgggagaataccggcagaagcttctaatgttcttggagatctcc
agctgctatgacccaagccagctcatctgcgacttcccttttgatggtctcctagaggaa
agagctctccttttggggcgaatgggtaaacacgaacaagccctcttcatttatgtccac
attctgaaggatacaaggatggctgaagagtactgccataaacactatgaccgaaacaaa
gatggcaacaaagatgtatatctttccctgcttcgaatgtatctgtccccaccaagtgtt
cactgcttgggaccaatcaagatggagctgctggagccccaagctaatctccaggctgct
ctgcaggttctggaattacatcacagcaaactagacactaccaaggccatcaatcttctt
ccagcaaacactcaaattaatgagatacgcatctttctggaaaaggtcctggaagaaaat
gcacaaaagaaacgtttcaatcaagtcctcaaaaatcttcttcaggcagagttcttaagg
gtccaggaggaacgcattttccaccagcaagtaaagtgtatcatcacagaggagaagttg
tgcatggtgtgtaagaagaagatagggaatagcgcatttgccaggtaccctaatggagtg
gttgtacactacttctgttccaaagaggtcaacccaactgacacctga
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