Sarcophilus harrisii (Tasmanian devil): 100916041 Help Entry 100916041         CDS       T02286                                  Symbol COL1A2 Name (RefSeq) collagen alpha-2(I) chain   KO K06236   collagen type I alpha Organism shr  Sarcophilus harrisii (Tasmanian devil) Pathway shr04151   PI3K-Akt signaling pathway shr04510   Focal adhesion shr04512   ECM-receptor interaction shr04611   Platelet activation shr04820   Cytoskeleton in muscle cells shr04926   Relaxin signaling pathway shr04933   AGE-RAGE signaling pathway in diabetic complications shr04974   Protein digestion and absorption shr05146   Amoebiasis shr05165   Human papillomavirus infection shr05205   Proteoglycans in cancer shr05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:shr00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     100916041 (COL1A2)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100916041 (COL1A2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100916041 (COL1A2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     100916041 (COL1A2)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     100916041 (COL1A2)   09152 Endocrine system    04926 Relaxin signaling pathway     100916041 (COL1A2)   09154 Digestive system    04974 Protein digestion and absorption     100916041 (COL1A2)  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     100916041 (COL1A2)   09172 Infectious disease: viral    05165 Human papillomavirus infection     100916041 (COL1A2)   09174 Infectious disease: parasitic    05146 Amoebiasis     100916041 (COL1A2)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     100916041 (COL1A2)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     100916041 (COL1A2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:shr00536]     100916041 (COL1A2) Glycosaminoglycan binding proteins [BR:shr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100916041 (COL1A2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  100916041 NCBI-ProteinID:  XP_031796637 Ensembl:  ENSSHAG00000005410 UniProt:  G3VSR0 LinkDB All DBs Position 5:complement(287644346..287672396) Genome browser AA seq 1367 aa AA seqDB search MLSFADARLWLLLAATWCLAAAQAVQEPPRGRKGPQGDRGPRGQRGPPGPPGRDGEDGPP GPPGPPGPPGLGGNFAAQYDASKGLDMGPGPMGLMGPRGPPGASGPPGAQGFQGPAGEPG EPGQTGPAGARGPPGPPGKSGEDGHPGKPGRPGERGIVGPQGARGFPGTPGLPGFKGIRG HNGLDGLKGQAGAPGVKGEPGAPGENGTPGQAGARGLPGERGRIGGPGPAGARGSDGSVG PVGPAGPLGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGELGLPGMTGPVGPAGNPG ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGASGPRGLAGEPGPAGSKGESGNKG EPGSAGPQGPPGPNGEEGKRGPNGEPGSTGPMGPPGLRGVPGSRGLPGADGRAGGMGPPG NRGPSGPAGARGPNGDAGRPGEPGLMGPRGLPGSPGNVGPTGKEGPAGLPGIDGRPGPTG PAGNRGEPGNIGFPGPKGPNGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGPTGVQG GKGEQGPAGPPGFQGLPGPSGPAGEGGKVGERGLPGEFGLPGPAGPRGERGPPGESGAVG PTGSIGSRGPSGPPGPDGNKGEPGVVGAPGNAGPAGSGGVPGERGAAGVPGGKGEKGETG PRGEFGNPGRDGARGAPGAMGAPGPAGATGERGEAGPAGPVGPTGNRGAPGDRGEAGPAG PNGFAGPPGAAGQAGAKGERGTKGPKGENGIVGPTGPVGAAGPAGPNGPPGPVGGRGDGG PPGMTGFPGAAGRTGAPGPAGITGPPGPPGAAGKEGPRGPRGDQGPLGRAGETGAVGPPG FAGEKGPPGEAGASGPPGSSGPQGLLGAPGILGLPGSRGERGLPGVSGSLGEPGPLGISG PPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGLAGHKGERGYPGNPGAVGNAG APGPHGTVGPAGKPGNRGEPGPVGSVGPVGPFGARGPSGPQGPRGDKGEVGDKGPRGMNG FKGHNGFQGLPGISGQHGDQGAPGSTGPAGPRGPAGPSGPPGKDGRPGHAGAVGPAGLRG SQGSQGPAGPPGPPGLPGPPGPSGGGYDFGYEGDFYRADQPRTQASLRPKDYEVDATLKS LNNQIETILSPEGSKKNPARTCRDLRLSHPDWNSGFYWVDPNQGCTMDAIKVYCDFSTGE TCIQAQPENIPAKAWHNPRSPQGKKHVWFGETLNGGTQFEYNMEGVTSKDMATQLAFMRL LANHASQNITYHCKNSVAYMDAESGSLKKAVILQGSNDVELTAEGNSRFTYTVLEDGCSR KNNEWGKTVIEYKTNKPSRLPFLDIAPLDIGGTDQELRLHIGPVCFK NT seq 4104 nt NT seq  +upstreamnt  +downstreamnt atgctcagctttgcggacgcgcgcctctggctgctgctcgcggccacttggtgcctggcc gcagctcaggctgtacaggagccacccagaggaagaaagggaccacaaggagatagaggt ccacgcggtcaaaggggtcccccaggccctccaggcagagatggtgaagatggtccccca ggtcctcccggaccccctggtcctcctggtcttggtgggaacttcgcagcccaatacgat gctagcaaaggattggacatgggcccaggaccaatgggtttgatgggacccagaggcccc cctggtgcaagtggacctcctggtgcccaaggattccaaggacccgccggtgagccggga gagcctggtcagactggccccgcaggtgcccgaggaccccctggacctcctggaaagagt ggtgaagatggtcaccctggaaagccaggaaggcctggtgagagaggaattgtcggaccc cagggcgctcgaggcttccccgggactcccggtctgcctggattcaagggaatccggggg cacaatggtcttgatggactgaaaggacaagctggggctcctggagtcaagggtgaaccc ggcgcccccggagaaaatgggacccctggccaagcgggagcccgaggcctcccaggagag aggggacgcatcggagggcccggccccgcgggagctcgcggaagcgatggcagcgtcggc cccgtcggtcccgccggtccccttggctcggcgggtccccctggcttcccaggcgcccct ggccctaagggagaactcggccctgtcggcaaccctggccccgccggccccgccggccct cgtggagagctgggtcttcctggcatgactggtcctgttggtcctgcggggaatcccggt gccaatggtctgacgggagccaagggggcagcgggtctccctggtgtggctggtgccccc ggtctgcctgggccccgtggcatccctggtcctgccggcgctgctggggcctccggtccg agaggacttgcgggcgagcctggtcctgctggttccaaaggagagagtggaaacaaggga gaaccgggctctgccgggccccaaggccctcccggccccaacggtgaagaaggcaagaga ggacccaatggagagccaggatccacgggccccatgggcccccccggcctcagaggcgtc cctggatcccggggtcttcctggagccgacggccgagctggaggcatgggtccccccggt aaccgcggcccctccggacctgctggagcccgaggccccaatggagatgccggccggcct ggcgagcccgggctcatgggcccccgtggtctccctggctcccctggaaacgtcggcccc actgggaaggaaggccctgccggtctccctgggatcgatggccgacccggccccacaggt cctgctgggaacagaggcgagcccgggaacatcggcttcccaggacccaaaggccctaat ggcgatcctggcaaagccggagagaaaggtcacgctggtctcgctggtgctcggggcgcc cctggccccgatgggaacaacggtgctcagggaccccccggccccacgggtgtacaaggt gggaaaggcgaacagggtcccgctggtcctccaggcttccagggtctacctggcccctcg ggccctgcaggtgaaggcggcaaagtaggagaaaggggtctccctggtgaatttggcctc cctggccctgccggcccaagaggtgaacgtggtccccccggagaaagcggagctgtcggt cctacaggttccatcggaagccgcggtccatctggtcccccgggccccgatggcaacaag ggagagcctggtgtggttggtgcccctggaaacgcaggcccagctggctccggtggagtg ccaggagagcgtggtgcagccggtgtccctggaggcaaaggagaaaagggtgaaactggt cccagaggagaattcggaaacccaggcagagacggcgctcggggagctcctggtgccatg ggtgccccgggtcccgccggagccactggggagaggggtgaagctggtcccgccggtcct gttggtcccaccgggaaccgaggagctcctggtgaccgtggagaggccgggcctgcaggc cccaacggatttgctggccctcctggcgctgctggccaagctggagcaaagggagaacgc ggaaccaaggggcctaagggagagaacggcatcgtgggccccaccggccccgtgggcgca gctggccccgcgggtcccaatggcccccctggtcctgttggaggtcgtggcgatggcggt ccccctggtatgactggcttccctggtgctgctggaagaactggagcccccgggcctgct ggtatcactggccctcccggtccccctggtgctgctggaaaagaagggccccggggtccc cgtggtgaccagggtcccctcggccgtgctggagagacaggcgccgtcggcccccctggc tttgctggagagaagggtccccccggagaggccggtgccagtggtccccccggctcctca ggccctcaaggtcttctcggtgctcctggcattctgggtctccccggctcaagaggcgag cgtggtcttcccggggtctcgggctctctgggtgaacccggtcctcttggcatttctggt cctcccggagctcgaggcccccccggggccgtgggtagccctggcgtcaatggtgctcct ggcgaagctgggcgtgatgggaaccccggcaacgatggtcctcccggccgagacggtctc gctggtcacaagggagagcgaggctaccccggcaatcctggtgctgttggcaacgctgga gctcctgggcctcatgggactgtgggtcctgctggcaagcctggaaaccgcggtgagccg ggtcctgttggctcagtgggtcctgttggtcccttcggtgcaagaggtcccagtggtccc caaggtccccgaggtgacaaaggagaagttggtgacaagggaccgagaggcatgaatggt ttcaaaggacacaatggattccaaggcctccccggcatctctggccaacatggcgatcaa ggtgctcccggctcaactggccctgcaggccccaggggccctgctggtccttctggtcct cccggtaaagatggtcgccctggacatgcaggtgccgttgggcccgctggtctgcgtggt tctcagggcagtcaaggccccgcgggtcctcccggcccccccggcctgcccggtcccccc ggcccaagtggcggcggctacgacttcggttatgagggcgatttctaccgggctgaccag cctcgtactcaggcctccctcagacccaaggactacgaagtggacgctactctgaaatcc ctcaacaaccagatcgagaccatcctcagccccgaaggctccaagaagaaccctgcccgc acctgccgagacctgaggctcagccacccagactggaacagcggtttctactgggtcgac cccaaccagggctgcaccatggacgccatcaaagtgtactgtgacttctccactggggag acctgcatccaagcccagcctgagaacatccccgccaaggcctggcacaatcccaggagc ccccagggcaagaagcatgtgtggtttggggagacgctcaatggtggcacccagtttgaa tacaacatggaaggggtcacctccaaggacatggccacccagctggccttcatgcgcctg ctggccaaccacgcctcccagaatatcacctaccactgcaagaacagcgtggcttacatg gacgccgagagcggctctctgaagaaggccgtcatcctgcagggctccaacgatgtggag ctcaccgctgagggcaacagccgcttcacctacaccgtcctggaggacggctgctccaga aagaacaatgagtggggaaagaccgtcatcgaatacaagaccaacaagccttcccgcttg cccttcctggacatcgcgcctttggacattgggggcacagaccaagaactccgtttgcac attggcccagtctgtttcaaataa

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