Sarcophilus harrisii (Tasmanian devil): 100916101
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Entry
100916101 CDS
T02286
Symbol
NCAM1
Name
(RefSeq) neural cell adhesion molecule 1 isoform X1
KO
K06491
neural cell adhesion molecule
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
shr04514
Cell adhesion molecule (CAM) interaction
shr04517
IgSF CAM signaling
shr05020
Prion disease
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
100916101 (NCAM1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
100916101 (NCAM1)
04517 IgSF CAM signaling
100916101 (NCAM1)
09160 Human Diseases
09164 Neurodegenerative disease
05020 Prion disease
100916101 (NCAM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100916101 (NCAM1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shr04515
]
100916101 (NCAM1)
04090 CD molecules [BR:
shr04090
]
100916101 (NCAM1)
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100916101 (NCAM1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
shr00537
]
100916101 (NCAM1)
04091 Lectins [BR:
shr04091
]
100916101 (NCAM1)
Membrane trafficking [BR:
shr04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
100916101 (NCAM1)
Cell adhesion molecules [BR:
shr04515
]
Immunoglobulin superfamily
NCAM1/2
100916101 (NCAM1)
CD molecules [BR:
shr04090
]
Proteins
100916101 (NCAM1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
100916101 (NCAM1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
shr00537
]
Others
100916101 (NCAM1)
Lectins [BR:
shr04091
]
I-type lectins (Siglecs)
100916101 (NCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
FN3_DSCAM-DSCAML_C
C2-set_2
Ig_6
C2-set_3
Ig_5
Ig_VEGFR-1-like_5th
V-set_CD47
Ig_PDGFR_d4
Collagen_bind_2
VEGFR1-3_N_Ig-like
Motif
Other DBs
NCBI-GeneID:
100916101
NCBI-ProteinID:
XP_031817062
Ensembl:
ENSSHAG00000015333
LinkDB
All DBs
Position
3:489567241..490024341
Genome browser
AA seq
1129 aa
AA seq
DB search
MLQTKDLIWTLFFLGTAVSLQVDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGE
KLTPNQQRISVVRNDDFSSTLTIYNANIDDAGIYKCIVSGEDGSESEATVNVKIFQKLMF
KNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIKGIK
KSDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSTVNATANLGQSVILMCEAKGY
PEPTMSWTKDGEQIEIEEDDKYGFNEDSSELTIRRVDKSDEAEYVCIAENKAGEQDASIQ
LKVFAKPKINYVENKTAMELEEQITLTCEASGDPIPSITWRTSTRNISNEEKASWTRPEK
QETLDGHIVVSSHVRVSSLTLKSIQYTDAGEYICTASNTIGQDSQAMYLEVQYAPKLQGP
VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNSPSASYLEVTPDSE
NDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDEVEPYSSTAQVQFDEPEATGGVPIL
KYKAEWRAVGEEMWHFKWYDAKEANLEGIITIMGLKPETTYAVRLSALNGKGLGEISGIS
EFKTQPVHTPPSQGEPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVKYRAKLSSE
WKPEIRLPSGSDHVMLKALEWNAEYEVFVVAENQQGKSKAAHFVFRTSAQPTAIPANGSP
TTSLGTGAIVGILIVIFVLLLVAVDITCYFLNKCGLLMCIAVNLCGKAGPGAKGKDMEEG
KAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEPELPADTTATVEDMLPSV
TTITTNSDTITETFATAQNSPTSETTTLTSSIAPPATAMPDSNSVPAGQATPSKGPVVSA
SSPPPAPAPKVAPLVDLSDTPTSAPAASNLSTSVLATQGAVLSPSAPTNVVEASKTPPGN
KAVPTPTPTNSTSPLAAVSEPAQAKQEPAATKGPDPEPAPPSAVKSPTEAATTLTSPKSE
AASVNTAKPAQGEDFKMDEGTFKTPEIDLAKDVFAALGSPAPAPAASGQAPELASSPADN
SLSPAPTKTEKAPVEAKSAPQETETQPAPAEVKTVPNEATQTNGNESKA
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaactaaggatctcatctggactttgtttttcctgggaactgcagtttctcta
caggtggatattgttcccagtcaaggggaaatcagtgttggagaatccaaattcttctta
tgtcaagtggctggggaagctaaggataaagacatttcctggttctcccctaatggagaa
aagctgaccccaaaccagcagcggatctcagtggtacggaatgatgatttttcctccaca
cttaccatctacaacgccaacattgatgatgccggcatctacaagtgcattgtttcagga
gaggacggcagtgaatcagaggctaccgtcaatgtgaagatctttcagaaactcatgttc
aagaatgcaccaactcctcaggagttcagagagggagaagatgccgtgattgtgtgtgat
gtggtcagctcactgcctcctaccatcatctggaagcataagggccgagatgttatcctg
aaaaaagacgtcagattcatagtcctgtccaacaactatctgcagatcaagggcatcaag
aaatcagatgaggggacatatcgctgtgagggtcggatcttggcccgtggagagatcaac
ttcaaagacattcaagtcattgtaaatgtaccacccactgttcaggccaggcagagcaca
gtgaatgcaacagcaaaccttggccagtcggtcatcctgatgtgtgaggcgaaaggttat
ccagaaccaacgatgagttggacaaaagatggagaacaaattgaaatagaggaagatgat
aaatatggcttcaacgaagatagctccgaactgaccatcaggagagtggacaagagtgat
gaagccgagtatgtctgtatcgctgaaaacaaagcaggagagcaagatgcttccatccaa
ctgaaagtcttcgcaaaacccaaaattaactatgtggagaacaaaaccgcgatggagttg
gaggagcagataactcttacctgtgaagcctcaggagaccctatcccctccatcacctgg
agaacttccacaagaaacatcagcaatgaagaaaaggcttcgtggactcgaccagagaag
caagagactctggatgggcacattgtggtgagcagccacgtgcgtgtgtcttccctgaca
ctgaagagcattcagtatacggatgccggagagtacatctgcaccgccagcaacaccatt
ggccaggattcccaagctatgtacctcgaagtacaatatgcccccaagcttcagggccct
gtggctgtgtacacctgggaagggaaccaggtgaacatcacctgtgaggtgtttgcctat
cccagcgccacgatctcctggttccgagatgggcagctgctgccgagctccaactacagc
aatatcaagatatacaatagcccctctgcgagctacctagaggtgacaccagattctgaa
aatgactttggaaactacaattgcactgcagtgaatcgtattggtcaagagtccttagag
ttcatccttgtccaagcagatactccgtcttcaccatccattgatgaagtggagccatat
tccagcacggcacaggttcagtttgatgagcctgaggccacaggcggagtgcccatcctc
aaatacaaagctgagtggagagcggtgggtgaggagatgtggcatttcaagtggtatgat
gccaaggaagcgaacctggaaggtatcatcaccatcatgggcctgaagccagagacaact
tatgccgtccgactgtctgccctcaatggaaagggactgggggagatcagtgggatctct
gagttcaaaacacagccagtccacacccctccttcacaaggagaacccagtgcacccaag
ctagaaggtcagatgggagaagatgggaactctattaaagtgaacttgatcaaacaggat
gacggaggatcccccattagacactatctggtcaagtatagagcgaagctgtcttcagag
tggaaacctgaaatcagactcccctcaggcagtgaccatgtcatgctcaaagccctggaa
tggaatgccgaatatgaggtcttcgtggtggctgagaaccagcagggaaaatccaaggca
gcccattttgtatttaggacctctgcccagcccacagctatcccagccaatggtagcccc
accaccagcctgggcaccggtgccattgtgggcatcctcattgttatctttgtcctcctc
ttggtggctgtggacatcacctgctacttcctgaacaagtgtggcttgctcatgtgcatt
gctgtcaacctgtgtggaaaagctggcccaggagccaaaggaaaagatatggaggaaggc
aaagctgcattctcgaaggatgaatccaaggagcccatagtagaggtgcggacagaagag
gaacggaccccaaaccatgatggagggaaacacacagagccaaatgagaccacgccactg
acagagccagagctgccagctgacaccacagccactgttgaggacatgctgccttctgtc
accaccatcaccactaactctgacactatcaccgaaacctttgccactgctcagaacagc
cccaccagtgagaccacaaccctgacttctagcattgcccctccagccacagccatgccg
gattccaattcagtgcccgctggccaggccacgccctctaagggcccagtagtgtccgcc
tcctccccgccacctgcgcccgcccccaaagtcgcccccctcgttgacctgagcgatacc
ccgacctcagctcctgcagctagcaatttgtcgactagtgtcctggccacccagggggcc
gtcctcagccccagcgcccccaccaatgtggtcgaggcctccaagactcctcctgggaat
aaggctgttcctactcccaccccgaccaattccactagtcccctggctgctgtctcagag
cccgcccaggccaaacaggagccagctgccaccaaaggcccagacccggagcccgctccg
cccagcgcggtgaagagcccgacagaggcagccacgaccctcactagcccgaagagtgaa
gctgcctccgtcaacactgcaaaacccgcccagggcgaggactttaaaatggacgaaggg
accttcaagaccccagagattgaccttgcaaaggatgtctttgcagccctgggttctcct
gctcctgcccccgcagcgagtgggcaagcccctgagcttgcttcttcccctgcagacaac
tctctgtcacctgcaccaacaaagaccgagaaagccccagtagaagcaaagtctgcaccc
caggagacagaaacccagccagctccagcagaagtcaagacggtccccaacgaagccaca
caaacaaatggaaatgagagcaaagcgtga
DBGET
integrated database retrieval system
