Sarcophilus harrisii (Tasmanian devil): 100916978
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Entry
100916978 CDS
T02286
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100916978 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100916978 (SF3B1)
03036 Chromosome and associated proteins [BR:
shr03036
]
100916978 (SF3B1)
Spliceosome [BR:
shr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100916978 (SF3B1)
Complex B
100916978 (SF3B1)
Complex C
U2 SnRNP specific factors
100916978 (SF3B1)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100916978 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
100916978
NCBI-ProteinID:
XP_003764117
Ensembl:
ENSSHAG00000017564
UniProt:
G3WZ55
LinkDB
All DBs
Position
3:369407426..369454841
Genome browser
AA seq
1303 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGNDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKSGYQPTVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSNWDQAETPGHTPSLRWDETPGRAKG
SETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTER
DTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG
TPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGY
VPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVD
VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQAR
HTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGI
ESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPD
EEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELA
NKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQ
EQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVV
MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLT
PILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTF
GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL
NVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYG
FGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKV
RDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaactcacgaagatattgaagcacagattcgagaaatccaaggg
aagaaggcagctcttgatgaagctcaaggagttggccttgattctacaggttattatgac
caagaaatttatggtggtaatgacagtagatttgctggctacgtgacatcaattgctgca
actgaattagaagatgatgatgatgactactcctcatccactagcctgcttggccagaag
aaatcaggataccaacccacagtggcattgcttaatgacataccacagtcaactgaacag
tatgacccatttgctgaacaccgtcctccaaagattgcagaccgtgaagatgaatataaa
aagcacaggcgaactatgataatttctccagagcgtcttgatccttttgcagatggcggc
aagacacctgaccctaaaatgaatgctaggacctatatggatgttatgcgagaacaacat
ttgactaaagaggagagggaaattaggcaacagctagcagaaaaagctaaagctggagaa
cttaaagttgtcaatggtgcatcatcccagccgccttcaaaacgcaagaggcgttgggat
cagacagctgatcagactcctggtgcaactccaaaaaagctctcaaactgggatcaagct
gagactcctgggcatacaccttccttgagatgggatgaaacacctggtcgtgcaaagggt
agtgagacacctggagcaacacctggctcaaaaatatgggatcctactcctagccatact
ccagcaggagctgctactcctggacgtggtgatacccctggtcatgcaaccccaggccat
ggaggtgcaacctcaagtgcacgtaaaaatagatgggatgagactcctaaaactgaaaga
gatactcctggtcatggaagtggatgggctgagactcctcgtacagatcgtggtggagat
tcaattggtgaaacaccaactcctggagcaagcaaaagaaagtcacgttgggatgaaaca
ccagctagtcaaatgggtgggagcactcctgttctgactcctggtaaaacaccaataggc
acacctgctatgaacatggcaacacctactccaggtcacataatgagcatgaccccagaa
cagcttcaggcatggagatgggaaagagaaattgatgagagaaatcgtccactttctgat
gaagagctggatgctatgttcccagaaggatataaggtactccctcctccggctggctat
gttcctattcgtactccagcccggaagctgacagcaactcctacacctttaggtggcatg
actggattccacatgcaaactgaagataggactatgaaaagtgtgaatgatcagccatct
ggaaatcttccatttttaaaacctgatgatattcaatactttgataaactattggtggat
gtagatgaatcaacacttagtccagaagaacaaaaagagagaaaaataatgaaattgctt
ttaaaaatcaagaatggcacacctccaatgagaaaggctgcattgcgtcagatcactgac
aaagctcgtgaatttggagctgggcctttgtttaatcaaattcttccattgctgatgtct
ccaacacttgaagatcaggaacgtcatttacttgtaaaagttattgacagaattttgtac
aagctcgatgatcttgttcgaccatatgtacataagatccttgtggttattgaaccacta
ctgattgatgaagattactatgccagagtggaaggcagggagatcatttcaaatttggct
aaggctgctggcctggcaaccatgatttctactatgcgacctgacattgataacatggat
gaatatgtccgtaatacaacagctcgagcttttgctgttgttgcatctgccttgggcatt
ccttcactgttgccctttttgaaagctgtgtgtaagagcaagaagtcctggcaggctagg
catactggtattaaaattgtacagcaaattgctattcttatgggttgtgccatccttcct
catctcagaagtttagttgaaatcattgaacatggtcttgtggatgaacaacagaaagtc
cggaccattagtgctttggctattgctgctctggctgaagcagctactccttatggcatt
gaatcttttgattctgttttaaagccgttgtggaaaggtatccgccagcacagaggaaag
ggcttggctgccttcttgaaagctattggatatcttattcccctcatggatgcagaatat
gcaaactactatactagagaagtgatgttaatccttatcagagaattccaatctcctgat
gaagaaatgaaaaaaattgtattgaaggtggtaaagcagtgctgtgggacagatggtgta
gaagcaaattacatcaaaacagagattcttcctccttttttcaaacatttttggcaacac
agaatggccttggaccgaagaaattatagacaattagtggataccacagtggagttggca
aacaaagtaggtgcagcagaaattatttctcggattgtggatgatctaaaagatgaagct
gaacagtataggaaaatggttatggaaactattgagaaaataatgggaaacttgggtgca
gcagatattgaccacaaacttgaagaacaacttattgatggcatcctctatgcctttcag
gaacagaccacagaggactcagtgatgttgaatggttttggcacagtagtcaatgccctt
ggcaagagagtcaaaccatacttgcctcagatctgtggtacagttttgtggcgtttgaac
aacaaatcagccaaagtcagacaacaggctgctgacctcatctctcgtactgctgttgtt
atgaaaacttgtcaggaggaaaaattgatgggacatttgggtgttgtcctgtatgagtac
ttgggtgaagagtaccctgaagtattgggaagcatccttggagcactgaaggccattgtg
aatgtaataggtatgcacaagatgactccaccaattaaagatttattgccacggcttaca
ccaatcttaaagaatagacatgagaaagtacaagaaaactgtattgatcttgttggacgt
attgctgacaggggagcagaatatgtctctgcaagagaatggatgagaatctgctttgaa
cttttagaattgttaaaagctcataaaaaagctatccggagagccacggtcaatacattt
ggttatattgcaaaagccattggaccccatgatgtactggctacactgctaaacaacctc
aaagttcaagaaagacaaaaccgagtatgtacaacagtggccatagctattgtagcagag
acatgctcaccattcacagtcctgcctgcactgatgaatgaatatcgagttcctgaactg
aatgtgcagaatggtgttttaaaatcactttctttcttgtttgaatacattggagaaatg
ggaaaagactatatttatgctgtaacaccattacttgaagatgctttgatggacagagat
cttgtacaccgacagactgccagtgcagtggtgcaacacatgtctcttggggtttatgga
tttggttgtgaagattctcttaatcatttgttgaattatgtatggcctaatgtgtttgag
acatctccccatgttattcaagcagttatgggagctctggaaggcctaagagttgctatt
ggaccatgtagaatgttgcagtactgtttgcagggtttgtttcacccagccagaaaagtc
agagatgtgtactggaagatttacaattctatctacattggttcacaggatgcactcata
gcacattatccaagaatctacaatgatgaaaaaaacacctatattcgttatgaacttgac
tatatcttataa
DBGET
integrated database retrieval system
