Sarcophilus harrisii (Tasmanian devil): 100917197
Help
Entry
100917197 CDS
T02286
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100917197 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100917197 (COL13A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100917197 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100917197
NCBI-ProteinID:
XP_031812695
Ensembl:
ENSSHAG00000004917
LinkDB
All DBs
Position
2:complement(632896300..633092816)
Genome browser
AA seq
722 aa
AA seq
DB search
MIEDKARHGASEAAAAGARGEPCPRPPLPRSCALLGGVSLFSLALSLLVHFRSAELQSRL
GRLEAEQRRPPPQQPPQPPAWLAAHQMEEAILGRVNQLLEEKLKLHLTKRREPRDTSLRC
NCPPGPPGPAGRPGLPGDKGALGIPGRVGLKGQPGEKGAPGDAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGFPGPKGEMGLSGPKGQPGPPGQKGEKGQCGDYPHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPAGPIGPLGNPGEPGPMGPPGRTGEPGK
PGKDGKGLPGPPGPKGDPGIQGYHGRKGEKGSSGTPGLPGFLGQKGEKGDAGNAIGGGRG
EPGPPGIPGPPGPKGEAGTSGQTGPPGRQGDKGEIGAPGEQGPAGPKGAKGEPGKGEMVD
YNGNINEALQEIRTLALMGPPGLPGQTGPPGAPGVPGQKGEIGLPGPPGHDGEKGPRGKP
GETGPPGLQGPQGKDGPPGPKGEKGNVGTPGEKGETGQVGSPGLDGPTGEKGEPGDQGKP
GAAGLPGPIGLPGFTGEKGEPGEKGDPGTEVSGPPGPQGPPGPAGLQGVPGPKGEAGLDG
MKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVPGPAGPKGERGSKGDPGITG
PMGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCW
NK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggacaaggctcgccacggggccagcgaggcggcggcggcgggggcccggggg
gagccgtgcccccggccccctttgccccggagctgcgcgctgctgggcggcgtgtccctg
ttctcgctggcgctcagcctcctggtgcactttcggagcgcggagctgcagtcccgcctg
ggccggctggaagccgagcagcggcgcccgcccccgcagcagcccccgcagccccccgcc
tggctggccgcgcaccaaatggaggaggctattttgggaagagtcaaccagctgctggaa
gagaaactgaaacttcatttgaccaagcgacgagagcctcgggatacatcgttgagatgt
aactgtccgccaggaccccctggtcccgcaggaagacctggacttccgggagacaaaggc
gcccttgggatcccgggacgagtgggactcaagggccagccaggagagaagggagcaccg
ggagatgccggaatgtctattatcggtcctcgcggtcccccgggtcagcccggcacaaga
ggctttcctggatttccgggtcccatcggcttagacggcaaaccgggtttccctggcccg
aagggggagatgggtctgtcgggtcccaagggacaaccgggacctccaggacaaaaagga
gaaaagggtcagtgtggagactatccccacaggctgctgcctcttctcaattcggtgcgg
cttgcgccaccccccgtcataaaaagacgcaccttccagggtgaacagggacaagcaggc
atccaaggcccccctgggccgcctggtccccctggacctgccggacccattggccctctg
ggtaacccaggagaaccagggcccatggggccccctggcagaacaggagagccagggaaa
ccaggcaaggacggaaagggcttacctggacctcctggaccaaagggagaccccggaatt
cagggatatcatggacgaaagggtgagaagggaagttctggtactcccggcctgcctgga
ttcctgggccagaagggagagaaaggggatgcaggcaatgccattggaggaggacgaggg
gagccagggcccccagggataccaggaccgccaggaccaaaaggagaagctggcaccagt
ggccagactgggcctcctgggaggcaaggagacaagggagaaatcggcgcccctggagaa
cagggacctgccggccccaagggtgccaagggagagccgggcaaaggtgaaatggtggat
tacaatggaaacatcaatgaagctctccaggagatccgcactttggccttgatgggacct
cctggactcccagggcaaacaggcccaccaggagctcctggtgtaccaggacaaaaggga
gaaattggtctgccaggtcctccaggacatgatggggaaaagggacctcgaggaaaacca
ggagagactggcccccctggtctccaaggaccacaaggaaaggatggacctccagggcca
aaaggagaaaaaggaaatgtggggacacctggagagaaaggggaaacaggacaagttggc
tccccgggtcttgatggccccactggagagaaaggagaaccaggtgaccaagggaaacca
ggagctgcgggattgcctggtccaattgggctcccgggatttacaggagagaaaggagaa
cctggagagaagggtgacccaggaacagaggtatctggaccaccagggccccagggtccc
ccaggacctgcaggtctccaaggcgttcctggaccaaagggggaagctggacttgatgga
atgaaaggagagaagggtgtccagggagaaaaaggagaccgaggtccattgggattgcct
ggtgcttcaggtttggacggcaggcctgggccaccgggtactccaggaccagttggggtt
cccggcccagcaggaccaaaaggggaaaggggcagtaaaggagaccctgggatcacagga
ccaatgggagcagctgggcttcctggtttgcacggaccacccggtgacaaaggaaaccgg
ggggaaagggggaagaaaggctctagggggcctaaaggggataagggagaccaaggagcg
cctggattagatgccccctgtccattgggggaagatggcttgccagtccagggctgctgg
aataagtga
DBGET
integrated database retrieval system
