Sarcophilus harrisii (Tasmanian devil): 100917652
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Entry
100917652 CDS
T02286
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100917652 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
100917652 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100917652 (PABPC1)
03041 Spliceosome [BR:
shr03041
]
100917652 (PABPC1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100917652 (PABPC1)
mRNA cycle factors
Stress granule specific factors
100917652 (PABPC1)
Spliceosome [BR:
shr03041
]
Complex C
Other components
Complex C specific factors
100917652 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
100917652
NCBI-ProteinID:
XP_031802921
Ensembl:
ENSSHAG00000011267
UniProt:
A0A7N4PH76
LinkDB
All DBs
Position
1:complement(582150453..582165556)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAY
YPASQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRV
ANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ
EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccctatggcctcgctctacgtgggggatctgcacccc
gatgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggctacgcctatgtcaacttccag
cagccggcggacgctgaacgggcattggatacaatgaattttgatgtcattaagggcaag
ccagtgcgtatcatgtggtctcaacgtgatccatcactacgtaaaagtggtgtgggcaat
atattcatcaaaaatttggataaatccattgataataaagcattgtatgatacattttct
gcttttggaaacatcctttcttgtaaggtggtatgtgatgaaaatgggtcaaagggctat
ggatttgtacactttgagacacaggaagctgctgaaagagctattgaaaaaatgaatgga
atgcttcttaatgatcgaaaagtctttgtcggtcgatttaagtcccgtaaagaaagagaa
gcagaacttggagctagagcaaaagagttcaccaatgtttacatcaaaaattttggtgag
gacatggatgatgaaagacttaaggagctctttggcaagtttggacctgccttaagtgta
aaagtaatgactgatgaaagtggaaaatccaaaggttttggctttgtgagctttgaaaga
catgaagatgcacaaaaagctgtagatgaaatgaacgggaaagaactaaatggaaaacaa
atttatgttggccgagctcagaaaaaagtggaaagacagacggaactcaagcgcaaattt
gaacaaatgaagcaggataggatcaccagataccagggtgttaatctatatgtgaaaaat
cttgatgatggtattgatgatgagcgtctgagaaaagaattctcaccatttggtacaatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaagggtttgggtttgtatgcttc
tcttcaccggaggaagccaccaaagcagtcacagaaatgaatggcagaattgttgccact
aagccattgtatgtagctttagcccagcgcaaagaggagcggcaggctcacctcacaaat
cagtatatgcagagaatggcgagcgtcagagctgtgcccaaccctgtaatcaacccctat
cagcctccttcaggttacttcatggcagctattcctcagactcagaaccgtgctgcatat
tatcctgctagccaaattgctcaactcagaccaagtcctcgctggactgctcagggtgcc
agacctcatccattccagaatatgcccggtgctatccgcccagcagctcctaggccacca
tttagtacaatgagaccagcttcttcacaggttccacgagtcatgtcaacacagcgtgtt
gcaaacacatcaactcagacaatgggtccacgtcctgcagctgctgcagctgcagctact
cctgctgtccgcacagttccacaatataagtatgctgcaggtgttcgcaatcctcaacag
catcttaatgcacaaccacaggttaccatgcagcagcctgctgttcatgtgcaaggtcag
gaacctttaactgcttccatgttggcttccgcccctcctcaagagcaaaagcagatgttg
ggtgaacggctgtttccactcattcaggccatgcaccctaccctggctggtaaaatcact
ggcatgttgctagaaattgacaactctgagcttcttcatatgcttgagtctcccgagtct
ctccgctctaaggttgatgaagctgtagccgtactgcaagctcaccaagctaaagaagct
gcccagaaagcagttaacagtgccactggtgttccaactgtttaa
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